From 721926a1041203c2c21740c7370b36ed041088fb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Lo=C3=AFc=20Le=20Guyader?= <loic.le.guyader@xfel.eu>
Date: Thu, 22 Jul 2021 10:34:51 +0200
Subject: [PATCH] Closes #17
---
scripts/start_job_single.sh | 4 ++++
scripts/start_processing_all.sh | 10 ++++++----
2 files changed, 10 insertions(+), 4 deletions(-)
diff --git a/scripts/start_job_single.sh b/scripts/start_job_single.sh
index 68e97d6..d3934e9 100755
--- a/scripts/start_job_single.sh
+++ b/scripts/start_job_single.sh
@@ -9,5 +9,9 @@ RUN=$1
MODULES=$2
RUNTYPE=$3
+source /etc/profile.d/modules.sh
+module load exfel
+module load exfel_anaconda3/1.1
+
echo processing modules $MODULES of run $RUN
python process_data_201007_23h.py --run-number $RUN --module ${MODULES} --runtype $RUNTYPE
diff --git a/scripts/start_processing_all.sh b/scripts/start_processing_all.sh
index 681315e..f0fba41 100755
--- a/scripts/start_processing_all.sh
+++ b/scripts/start_processing_all.sh
@@ -4,10 +4,12 @@ RUN=$1
RUNTYPE=$2
if [ $RUN ] && [ $RUNTYPE ]
- then
+ then
echo processing run $RUN
-# module load exfel
-# module load exfel_anaconda3/1.1
+ source /etc/profile.d/modules.sh
+ module load exfel
+ module load exfel_anaconda3/1.1
+
sbatch ./start_job_single.sh $RUN '0 1 2 3' $RUNTYPE
sbatch ./start_job_single.sh $RUN '4 5 6 7' $RUNTYPE
sbatch ./start_job_single.sh $RUN '8 9 10 11' $RUNTYPE
@@ -16,4 +18,4 @@ if [ $RUN ] && [ $RUNTYPE ]
echo please specify a run number and type
echo available runtypes:
echo energyscan, energyscan_pumped, static, static_IR, delayscan, timescan
-fi
\ No newline at end of file
+fi
--
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