From d965fd2c8a1e2c1b182fb24ffe92c15b9a30d1e4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Lo=C3=AFc=20Le=20Guyader?= <loic.le.guyader@xfel.eu>
Date: Sat, 28 Aug 2021 16:47:27 +0200
Subject: [PATCH] Update BOZ I notebook for 2.25 MHz data and 0.33 ph/bin dark
figure
---
...ysis part I parameters determination.ipynb | 36 ++++++++++++++-----
1 file changed, 27 insertions(+), 9 deletions(-)
diff --git a/doc/BOZ analysis part I parameters determination.ipynb b/doc/BOZ analysis part I parameters determination.ipynb
index 9c89c0d..750b0d3 100644
--- a/doc/BOZ analysis part I parameters determination.ipynb
+++ b/doc/BOZ analysis part I parameters determination.ipynb
@@ -150,11 +150,11 @@
},
"outputs": [],
"source": [
- "proposal = 2619\n",
- "darkrun = 33\n",
- "run = 38\n",
+ "proposal = 2937\n",
+ "darkrun = 478\n",
+ "run = 477\n",
"module = 15\n",
- "gain = 4"
+ "gain = 0.5"
]
},
{
@@ -212,7 +212,26 @@
"metadata": {},
"outputs": [],
"source": [
- "mean_th = (30, 56)\n",
+ "dark = boz.average_module(params.arr_dark).compute()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "pedestal = np.mean(dark)\n",
+ "pedestal"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "mean_th = (pedestal-25, pedestal+30)\n",
"f = boz.inspect_dark(params.arr_dark, mean_th=mean_th)\n",
"f.savefig(path+f'p{params.proposal}-r{params.run}-d{params.darkrun}-inspect-dark.png', dpi=300)"
]
@@ -287,7 +306,7 @@
"metadata": {},
"outputs": [],
"source": [
- "params.rois_th = 130\n",
+ "params.rois_th = 1\n",
"params.rois = boz.find_rois_from_params(params)"
]
},
@@ -306,7 +325,6 @@
"metadata": {},
"outputs": [],
"source": [
- "dark = boz.average_module(params.arr_dark).compute()\n",
"data = boz.average_module(params.arr, dark=dark).compute()\n",
"dataM = data.mean(axis=0) # mean over pulseId"
]
@@ -448,8 +466,8 @@
"metadata": {},
"outputs": [],
"source": [
- "N = 40\n",
- "domain = boz.nl_domain(N, 40, 280)\n",
+ "N = 80\n",
+ "domain = boz.nl_domain(N, 40, 511)\n",
"params.alpha = 0.5\n",
"params.max_iter = 25"
]
--
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