From 16e33505c066496ee55edc4fd8c5afdbf4e33a73 Mon Sep 17 00:00:00 2001
From: Thomas Kluyver <thomas.kluyver@xfel.eu>
Date: Wed, 11 Oct 2023 12:43:43 +0200
Subject: [PATCH] Record threshold as RUN data in files
---
notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb b/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb
index b679a9aa2..8caea9b49 100644
--- a/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb
+++ b/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb
@@ -60,7 +60,7 @@
"\n",
"# Parameters for ROI selection and reduction\n",
"roi_definitions = [-1] # List with groups of 6 values defining ROIs, e.g. [3, 120, 180, 200, 550, -2] for module 3 (JNGFR03), slice 120:180, 200:550, average along axis -2 (slow scan, or -1 for fast scan)\n",
- "roi_threshold = 2 # Corrected pixels below the threshold will be excluded from ROI projections. Set to -1 to include all pixels.\n",
+ "roi_threshold = 2. # Corrected pixels below the threshold will be excluded from ROI projections. Set to -1 to include all pixels.\n",
"\n",
"def balance_sequences(in_folder, run, sequences, sequences_per_node, karabo_da):\n",
" from xfel_calibrate.calibrate import balance_sequences as bs\n",
@@ -481,6 +481,7 @@
" # Add roi run control datasets.\n",
" ctrl_source.create_run_key(f'roi{rois_defined}.region', np.array([[a1, a2, b1, b2]]))\n",
" ctrl_source.create_run_key(f'roi{rois_defined}.reduce_axis', np.array([mean_axis]))\n",
+ " ctrl_source.create_run_key(f'roi{rois_defined}.threshold', np.array([roi_threshold], dtype=np.float32))\n",
" \n",
" if rois_defined:\n",
" # Copy the index for the new source\n",
--
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