diff --git a/notebooks/REMI/REMI_Digitize_and_Transform.ipynb b/notebooks/REMI/REMI_Digitize_and_Transform.ipynb
index 95b065bd9839b49d92acd326946b82f3471bd779..1968322d6f074887d7d89652c5ad4aeab176bed6 100644
--- a/notebooks/REMI/REMI_Digitize_and_Transform.ipynb
+++ b/notebooks/REMI/REMI_Digitize_and_Transform.ipynb
@@ -257,6 +257,15 @@
     "    \n",
     "    if num_pulses == 0:\n",
     "        return\n",
+    "    elif len(ppl_pos) == 0 and ppl_offset < 0:\n",
+    "        # No PPL pulses, but a negative offset is configured. This will cause\n",
+    "        # first_pulse_offset to start early and most likely miss pulses at the\n",
+    "        # end, so we correct by adding the ppl_offset to relative positions\n",
+    "        # when computing trace positions.\n",
+    "        pos_corr = abs(ppl_offset)\n",
+    "    else:\n",
+    "        pos_corr = 0\n",
+    "        \n",
     "\n",
     "    rel_pos = all_pos - all_pos[0]\n",
     "\n",
@@ -265,7 +274,7 @@
     "    elif num_pulses == 1:\n",
     "        pulse_len = single_pulse_length\n",
     "\n",
-    "    start_frac = first_pulse_offset + rel_pos * 2 * clock_factor\n",
+    "    start_frac = first_pulse_offset + (rel_pos + pos_corr) * 2 * clock_factor\n",
     "    start_int = start_frac.astype(int)\n",
     "\n",
     "    pulse_offset = pulse_offsets[index]\n",