From 4251181021cfae8dcbb1a3e770b0ce747557c038 Mon Sep 17 00:00:00 2001
From: karnem <mikhail.karnevskiy@desy.de>
Date: Fri, 27 Sep 2019 16:55:11 +0200
Subject: [PATCH] Make BP injection steerable for instrument
---
.../AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb | 45 +++++++++++++------
1 file changed, 32 insertions(+), 13 deletions(-)
diff --git a/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb b/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb
index af08e7044..fd917f539 100644
--- a/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb
+++ b/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb
@@ -38,12 +38,12 @@
"source": [
"in_folder = '/gpfs/exfel/exp/MID/201931/p900091/raw' # path to input data, required\n",
"modules = [1,] # modules to work on, required, range allowed\n",
- "out_folder = \"/gpfs/exfel/exp/SPB/201931/p900091/usr/PC/\" # path to output to, required\n",
+ "out_folder = \"/gpfs/exfel/exp/MID/201931/p900091/usr/PC/4.5_250/\" # path to output to, required\n",
"runs = [30, 23, 24, 25, 26, 27, 28, 29] # runs to use, required, range allowed\n",
"n_sequences = 3 # number of sequence files, starting for 0 to evaluate\n",
- "cluster_profile = \"noDB44\" # The ipcluster profile to use\n",
+ "cluster_profile = \"noDB\" # The ipcluster profile to use\n",
"local_output = True # output constants locally\n",
- "db_output = False # output constants to database\n",
+ "db_output = True # output constants to database\n",
"bias_voltage = 300 # detector bias voltage\n",
"cal_db_interface = \"tcp://max-exfl016:8019\" # the database interface to use\n",
"mem_cells = 0. # number of memory cells used, use 0 to auto-derive\n",
@@ -53,7 +53,8 @@
"instrument = \"MID\"\n",
"high_res_badpix_3d = False # set this to True if you need high-resolution 3d bad pixel plots. Runtime: ~ 1h\n",
"acq_rate = 0. # the detector acquisition rate, use 0 to try to auto-determine\n",
- "dont_use_dir_date = False"
+ "dont_use_dir_date = False\n",
+ "gain_setting = 0.1 # gain setting can have value 0 or 1, Default=0.1 for no (None) gain-setting"
]
},
{
@@ -122,7 +123,12 @@
" loc = \"MID_DET_AGIPD1M-1\"\n",
" dinstance = \"AGIPD1M2\"\n",
"print(\"Detector in use is {}\".format(loc))\n",
- "\n"
+ "\n",
+ "# Convert gain-setting in case of still being 0.1\n",
+ "if gain_setting == 0.1:\n",
+ " gain_setting = None\n",
+ " \n",
+ "print(\"Gain setting: {}\".format(gain_setting))"
]
},
{
@@ -524,7 +530,8 @@
" Constants.AGIPD.Offset(),\n",
" Conditions.Dark.AGIPD(\n",
" memory_cells=mem_cells,\n",
- " bias_voltage=bias_voltage, acquisition_rate=acq_rate),\n",
+ " bias_voltage=bias_voltage, acquisition_rate=acq_rate,\n",
+ " gain_setting=gain_setting),\n",
" np.zeros((128, 512, mem_cells, 3)),\n",
" cal_db_interface, creation_time=creation_time)\n",
" print(\"Offset for {} was injected on {}\".format(qm, when))\n",
@@ -534,7 +541,8 @@
" Constants.AGIPD.Noise(),\n",
" Conditions.Dark.AGIPD(\n",
" memory_cells=mem_cells,\n",
- " bias_voltage=bias_voltage, acquisition_rate=acq_rate),\n",
+ " bias_voltage=bias_voltage, acquisition_rate=acq_rate,\n",
+ " gain_setting=gain_setting),\n",
" np.zeros((128, 512, mem_cells, 3)),\n",
" cal_db_interface, creation_time=creation_time)\n",
" print(\"Noise for {} was injected on {}\".format(qm, when))\n",
@@ -544,7 +552,8 @@
" Constants.AGIPD.ThresholdsDark(),\n",
" Conditions.Dark.AGIPD(\n",
" memory_cells=mem_cells,\n",
- " bias_voltage=bias_voltage, acquisition_rate=acq_rate),\n",
+ " bias_voltage=bias_voltage, acquisition_rate=acq_rate,\n",
+ " gain_setting=gain_setting),\n",
" np.zeros((128, 512, mem_cells, 3)),\n",
" cal_db_interface, creation_time=creation_time)\n",
" print(\"Threshold for {} was injected on {}\".format(qm, when))\n",
@@ -1344,6 +1353,16 @@
" store_file.close()"
]
},
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "proposal = list(filter(None, in_folder.strip('/').split('/')))[-2]\n",
+ "file_loc = proposal + ' ' + ' '.join(list(map(str,runs)))"
+ ]
+ },
{
"cell_type": "code",
"execution_count": null,
@@ -1355,8 +1374,6 @@
},
"outputs": [],
"source": [
- "#if instrument == \"MID\":\n",
- "# acq_rate = None\n",
"if db_output:\n",
" for qm, r in fres.items():\n",
" metadata = ConstantMetaData()\n",
@@ -1366,11 +1383,12 @@
"\n",
" # set the operating condition\n",
" condition = Conditions.Dark.AGIPD(memory_cells=maxcells, bias_voltage=bias_voltage,\n",
- " acquisition_rate=acq_rate)\n",
+ " acquisition_rate=acq_rate, gain_setting=gain_setting)\n",
" metadata.detector_condition = condition\n",
"\n",
" # specify the a version for this constant\n",
" metadata.calibration_constant_version = Versions.Now(device=getattr(getattr(Detectors, dinstance), qm))\n",
+ " metadata.calibration_constant_version.raw_data_location = file_loc\n",
" metadata.send(cal_db_interface)\n",
" \n",
" # bad pixels\n",
@@ -1382,11 +1400,12 @@
" \n",
" # set the operating condition\n",
" condition = Conditions.Dark.AGIPD(memory_cells=maxcells, bias_voltage=bias_voltage,\n",
- " acquisition_rate=acq_rate)\n",
+ " acquisition_rate=acq_rate, gain_setting=gain_setting)\n",
" metadata.detector_condition = condition\n",
"\n",
" # specify the a version for this constant\n",
- " metadata.calibration_constant_version = Versions.Now(device=getattr(Detectors.AGIPD1M1, qm))\n",
+ " metadata.calibration_constant_version = Versions.Now(device=getattr(getattr(Detectors, dinstance), qm))\n",
+ " metadata.calibration_constant_version.raw_data_location = file_loc\n",
" metadata.send(cal_db_interface)"
]
},
--
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