From 497c877cd27575259f626f492ca6b8241629f157 Mon Sep 17 00:00:00 2001
From: Thomas Kluyver <thomas.kluyver@xfel.eu>
Date: Tue, 10 Oct 2023 19:06:56 +0200
Subject: [PATCH] Set default threshold to 2
---
notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb b/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb
index f915003c5..b679a9aa2 100644
--- a/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb
+++ b/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb
@@ -60,7 +60,7 @@
"\n",
"# Parameters for ROI selection and reduction\n",
"roi_definitions = [-1] # List with groups of 6 values defining ROIs, e.g. [3, 120, 180, 200, 550, -2] for module 3 (JNGFR03), slice 120:180, 200:550, average along axis -2 (slow scan, or -1 for fast scan)\n",
- "roi_threshold = -1 # Corrected pixels below the threshold will be excluded from ROI projections. Set to -1 to include all pixels.\n",
+ "roi_threshold = 2 # Corrected pixels below the threshold will be excluded from ROI projections. Set to -1 to include all pixels.\n",
"\n",
"def balance_sequences(in_folder, run, sequences, sequences_per_node, karabo_da):\n",
" from xfel_calibrate.calibrate import balance_sequences as bs\n",
--
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