From 4c6abd97e89e601723254205e7837c752757be67 Mon Sep 17 00:00:00 2001
From: ahmedk <karim.ahmed@xfel.eu>
Date: Tue, 3 Dec 2024 13:02:04 +0100
Subject: [PATCH] fix: put back out_folder as it is mandatory for
xfel-calibrate
---
notebooks/Jungfrau/Jungfrau_Create_Gain_maps_NBC.ipynb | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/notebooks/Jungfrau/Jungfrau_Create_Gain_maps_NBC.ipynb b/notebooks/Jungfrau/Jungfrau_Create_Gain_maps_NBC.ipynb
index 96f17e552..996b52621 100755
--- a/notebooks/Jungfrau/Jungfrau_Create_Gain_maps_NBC.ipynb
+++ b/notebooks/Jungfrau/Jungfrau_Create_Gain_maps_NBC.ipynb
@@ -37,7 +37,8 @@
"outputs": [],
"source": [
"in_folder = '/gpfs/exfel/exp/MID/202330/p900322/raw' # RAW data path, required\n",
- "fit_data_folder = \"/gpfs/exfel/data/scratch/ahmedk/test/jf_ff/gain_maps\" # Output path for gain data, required\n",
+ "out_folder = \"/gpfs/exfel/data/scratch/ahmedk/test/jf_ff/gain_maps\" # Output path for gain data, required\n",
+ "fit_data_folder = \"\" # One can add fit data files in a separate path an point to it here.\n",
"metadata_folder = '' # Directory containing calibration_metadata.yml when run by xfel-calibrate\n",
"runs = [94] # Number of high gain\n",
"\n",
@@ -138,7 +139,9 @@
"outputs": [],
"source": [
"run = runs[0]\n",
- "fit_data_folder = Path(fit_data_folder)\n",
+ "out_folder = Path(out_folder)\n",
+ "if not fit_data_folder:\n",
+ " fit_data_folder = out_folder\n",
"proposal = list(filter(None, in_folder.strip('/').split('/')))[-2]\n",
"file_loc = raw_data_location_string(proposal=proposal, runs=runs)\n",
"report = get_report(metadata_folder)\n",
--
GitLab