diff --git a/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb b/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb index 49003ccb8c02380f4fedcf6d5bdabc1f2b6a5645..78bd8d21a2c06d28d9267bee763ad0c923e11e4f 100644 --- a/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb +++ b/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb @@ -13,12 +13,13 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2018-12-06T15:54:23.218849Z", "start_time": "2018-12-06T15:54:23.166497Z" - } + }, + "collapsed": true }, "outputs": [], "source": [ @@ -74,23 +75,15 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2018-12-06T15:54:23.455376Z", "start_time": "2018-12-06T15:54:23.413579Z" - } + }, + "collapsed": false }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Disabled GPU usage after pyCuda import failed!: libcuda.so.1: cannot open shared object file: No such file or directory\n", - "Using Cython were available\n" - ] - } - ], + "outputs": [], "source": [ "import XFELDetAna.xfelprofiler as xprof\n", "\n", @@ -143,29 +136,15 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2018-12-06T15:54:23.679069Z", "start_time": "2018-12-06T15:54:23.662821Z" - } + }, + "collapsed": false }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\n", - "You are analyzing data in FF mode.\n", - "Reading data from: /gpfs/exfel/exp/SCS/201802/p002170/raw//r0277/RAW-R0277-DA05-S{:05d}.h5\n", - "\n", - "Run is: 277\n", - "HDF5 path: /INSTRUMENT/SCS_CDIDET_FCCD2M/DAQ/FCCD:daqOutput/data/image\n", - "Data is output to: /gpfs/exfel/data/scratch/xcal/test//r0277\n", - "Using 2018-12-09T20:11:32.007000 as creation time\n" - ] - } - ], + "outputs": [], "source": [ "if operation_mode == \"FS\":\n", " x = 960 # rows of the FastCCD to analyze in FS mode \n", @@ -197,25 +176,15 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2018-12-06T15:54:23.913269Z", "start_time": "2018-12-06T15:54:23.868910Z" - } + }, + "collapsed": false }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Bias voltage is 79 V\n", - "Detector gain is set to x8\n", - "Detector integration time is set to 1\n", - "Mean temperature was -2.50 °C / 270.65 K at beginning of run\n" - ] - } - ], + "outputs": [], "source": [ "\n", "sensorSize = [x, y]\n", @@ -255,12 +224,13 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2018-12-06T15:54:24.088948Z", "start_time": "2018-12-06T15:54:24.059925Z" - } + }, + "collapsed": true }, "outputs": [], "source": [ @@ -293,40 +263,15 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2018-12-06T18:43:39.776018Z", "start_time": "2018-12-06T18:43:39.759185Z" - } - }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Processing a total of 1 sequence files\n" - ] }, - { - "data": { - "text/latex": [ - "\\begin{tabular}{rl}\n", - "\\hline\n", - " \\# & file \\\\\n", - "\\hline\n", - " 0 & /gpfs/exfel/exp/SCS/201802/p002170/raw//r0277/RAW-R0277-DA05-S00000.h5 \\\\\n", - "\\hline\n", - "\\end{tabular}" - ], - "text/plain": [ - "<IPython.core.display.Latex object>" - ] - }, - "metadata": {}, - "output_type": "display_data" - } - ], + "collapsed": false + }, + "outputs": [], "source": [ "import copy\n", "from IPython.display import HTML, display, Markdown, Latex\n", @@ -350,24 +295,15 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2018-12-06T15:54:28.254544Z", "start_time": "2018-12-06T15:54:24.709521Z" - } + }, + "collapsed": false }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Temperature of detector when dark images (gain 8) for offset calculation were taken at: 270.45 K @ 2018-12-09 20:12:19+01:00\n", - "Temperature of detector when dark images (gain 2) for offset calculation were taken at: 267.29 K @ 2019-02-14 16:53:24+01:00\n", - "Temperature of detector when dark images (gain 1) for offset calculation were taken at: 267.27 K @ 2019-02-14 16:52:49+01:00\n" - ] - } - ], + "outputs": [], "source": [ "offsetMap = None\n", "badPixelMap = None\n", @@ -606,7 +542,9 @@ { "cell_type": "code", "execution_count": null, - "metadata": {}, + "metadata": { + "collapsed": true + }, "outputs": [], "source": [ "import dateutil.parser\n", @@ -1163,7 +1101,8 @@ "ExecuteTime": { "end_time": "2018-12-06T16:13:12.889583Z", "start_time": "2018-12-06T16:13:11.122653Z" - } + }, + "collapsed": true }, "outputs": [], "source": [ @@ -1239,7 +1178,8 @@ "ExecuteTime": { "end_time": "2018-12-06T16:11:08.317130Z", "start_time": "2018-12-06T16:11:05.788655Z" - } + }, + "collapsed": true }, "outputs": [], "source": [ @@ -1273,7 +1213,8 @@ "ExecuteTime": { "end_time": "2018-12-06T16:11:10.908912Z", "start_time": "2018-12-06T16:11:08.318486Z" - } + }, + "collapsed": true }, "outputs": [], "source": [ @@ -1317,7 +1258,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.6.7" + "version": "3.6.6" }, "latex_envs": { "LaTeX_envs_menu_present": true,