From 527be50f0c5dc33503a15d10066a2d8e4a6025dd Mon Sep 17 00:00:00 2001
From: Nuno Duarte <duarten@max-exfl001.desy.de>
Date: Wed, 23 Nov 2022 17:21:49 +0100
Subject: [PATCH] cleared out_folder in first cell
---
.../Characterize_FlatFields_ePix100_NBC.ipynb | 104 +++++++++---------
1 file changed, 52 insertions(+), 52 deletions(-)
diff --git a/notebooks/ePix100/Characterize_FlatFields_ePix100_NBC.ipynb b/notebooks/ePix100/Characterize_FlatFields_ePix100_NBC.ipynb
index 589d940b8..9b036373e 100644
--- a/notebooks/ePix100/Characterize_FlatFields_ePix100_NBC.ipynb
+++ b/notebooks/ePix100/Characterize_FlatFields_ePix100_NBC.ipynb
@@ -2,7 +2,7 @@
"cells": [
{
"cell_type": "markdown",
- "id": "1c7e1c06",
+ "id": "b195739b",
"metadata": {},
"source": [
"# ePix100 Flat Field Characterization\n",
@@ -15,12 +15,12 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "632e811d",
+ "id": "456b704f",
"metadata": {},
"outputs": [],
"source": [
"in_folder = '/gpfs/exfel/exp/MID/202231/p900310/raw' # input folder, required\n",
- "out_folder = '/gpfs/exfel/data/scratch/duarten/outputs' # output folder, required\n",
+ "out_folder = '' # output folder, required\n",
"metadata_folder = '' # Directory containing calibration_metadata.yml when run by xfel-calibrate\n",
"sequences = [-1] # sequences to process, set to -1 for all, range allowed\n",
"run = 29 # which run to read data from, required\n",
@@ -74,7 +74,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "a7e217c5",
+ "id": "eed2b98e",
"metadata": {},
"outputs": [],
"source": [
@@ -113,7 +113,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "04dcdabd",
+ "id": "6db90bbe",
"metadata": {},
"outputs": [],
"source": [
@@ -131,7 +131,7 @@
},
{
"cell_type": "markdown",
- "id": "1dca330a",
+ "id": "282bf2f5",
"metadata": {},
"source": [
"## Load Data"
@@ -140,7 +140,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "04be011d",
+ "id": "a7004c0c",
"metadata": {},
"outputs": [],
"source": [
@@ -167,7 +167,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "41591fdc",
+ "id": "9d75f4b7",
"metadata": {
"slideshow": {
"slide_type": "-"
@@ -224,7 +224,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "ad572c1e",
+ "id": "dded1e6e",
"metadata": {},
"outputs": [],
"source": [
@@ -266,7 +266,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "2f68865b",
+ "id": "893871d3",
"metadata": {},
"outputs": [],
"source": [
@@ -282,7 +282,7 @@
},
{
"cell_type": "markdown",
- "id": "50247fff",
+ "id": "d2a1a89f",
"metadata": {
"tags": []
},
@@ -293,7 +293,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "dcc980a6",
+ "id": "1c0cd3f5",
"metadata": {},
"outputs": [],
"source": [
@@ -321,7 +321,7 @@
},
{
"cell_type": "markdown",
- "id": "83c6ee4a",
+ "id": "d6e5ea6e",
"metadata": {},
"source": [
"## Instantiate calculators"
@@ -330,7 +330,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "d2a20082",
+ "id": "e45cca09",
"metadata": {},
"outputs": [],
"source": [
@@ -379,7 +379,7 @@
},
{
"cell_type": "markdown",
- "id": "d2a61263",
+ "id": "dba97bf9",
"metadata": {},
"source": [
"## Correct data"
@@ -388,7 +388,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "6298f8d7",
+ "id": "b3c46b59",
"metadata": {},
"outputs": [],
"source": [
@@ -403,7 +403,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "be0e8b03",
+ "id": "4447227d",
"metadata": {},
"outputs": [],
"source": [
@@ -438,7 +438,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "a80abef3",
+ "id": "36a952e2",
"metadata": {},
"outputs": [],
"source": [
@@ -467,7 +467,7 @@
},
{
"cell_type": "markdown",
- "id": "53e766d3",
+ "id": "19fa85ec",
"metadata": {},
"source": [
"## Plot histograms"
@@ -476,7 +476,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "d40f9942",
+ "id": "1862b145",
"metadata": {},
"outputs": [],
"source": [
@@ -498,7 +498,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "1fcb9f4c",
+ "id": "1c6f3528",
"metadata": {},
"outputs": [],
"source": [
@@ -528,7 +528,7 @@
},
{
"cell_type": "markdown",
- "id": "4034fc52",
+ "id": "74416dc3",
"metadata": {},
"source": [
"## Flat-Field Statistics"
@@ -537,7 +537,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "2a8322be",
+ "id": "9c1c3b53",
"metadata": {},
"outputs": [],
"source": [
@@ -555,7 +555,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "870bcfb3",
+ "id": "721f774d",
"metadata": {},
"outputs": [],
"source": [
@@ -595,7 +595,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "6d822905",
+ "id": "9fd2f808",
"metadata": {},
"outputs": [],
"source": [
@@ -614,7 +614,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "a9ee83ef",
+ "id": "9d58e028",
"metadata": {
"scrolled": false
},
@@ -649,7 +649,7 @@
},
{
"cell_type": "markdown",
- "id": "94762322",
+ "id": "3624621d",
"metadata": {},
"source": [
"## Plot random sample pixels "
@@ -658,7 +658,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "a09d5627",
+ "id": "ddb16296",
"metadata": {},
"outputs": [],
"source": [
@@ -708,7 +708,7 @@
},
{
"cell_type": "markdown",
- "id": "e3117832",
+ "id": "928f899c",
"metadata": {},
"source": [
"## Fit single photon peaks per pixel"
@@ -717,7 +717,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "e6d1134f",
+ "id": "2a4bccbe",
"metadata": {},
"outputs": [],
"source": [
@@ -748,7 +748,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "31465fa6",
+ "id": "9518f337",
"metadata": {},
"outputs": [],
"source": [
@@ -791,7 +791,7 @@
},
{
"cell_type": "markdown",
- "id": "58329334",
+ "id": "4d8f8441",
"metadata": {},
"source": [
"## Flat-Field Bad Pixels"
@@ -800,7 +800,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "4391a940",
+ "id": "ee754f67",
"metadata": {},
"outputs": [],
"source": [
@@ -847,7 +847,7 @@
},
{
"cell_type": "markdown",
- "id": "50a4ceb9",
+ "id": "7c6aba1b",
"metadata": {},
"source": [
"## Relative Gain Map"
@@ -856,7 +856,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "a036c8a1",
+ "id": "e0fbcaa8",
"metadata": {},
"outputs": [],
"source": [
@@ -880,7 +880,7 @@
},
{
"cell_type": "markdown",
- "id": "cb0f0679",
+ "id": "18fe5723",
"metadata": {},
"source": [
"## Absolute Gain Conversion Constant"
@@ -889,7 +889,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "c71b22d2",
+ "id": "4a4882fb",
"metadata": {},
"outputs": [],
"source": [
@@ -915,7 +915,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "0bde8503",
+ "id": "0db79cd0",
"metadata": {},
"outputs": [],
"source": [
@@ -951,7 +951,7 @@
},
{
"cell_type": "markdown",
- "id": "81662158",
+ "id": "9a6bb012",
"metadata": {},
"source": [
"## Gain Map Validation\n",
@@ -964,7 +964,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "186ebc07",
+ "id": "8ef93ce7",
"metadata": {},
"outputs": [],
"source": [
@@ -997,7 +997,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "243de317",
+ "id": "7be3645c",
"metadata": {},
"outputs": [],
"source": [
@@ -1028,7 +1028,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "10599c7f",
+ "id": "1db20c6a",
"metadata": {},
"outputs": [],
"source": [
@@ -1066,7 +1066,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "4d02f5ff",
+ "id": "4571dfee",
"metadata": {},
"outputs": [],
"source": [
@@ -1088,7 +1088,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "45c26d8e",
+ "id": "ea1f0175",
"metadata": {},
"outputs": [],
"source": [
@@ -1123,7 +1123,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "0c424437",
+ "id": "86882291",
"metadata": {
"scrolled": false
},
@@ -1226,7 +1226,7 @@
},
{
"cell_type": "markdown",
- "id": "26e07868",
+ "id": "1f796a91",
"metadata": {},
"source": [
"## Linearity Analysis"
@@ -1235,7 +1235,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "462dbee2",
+ "id": "0033326a",
"metadata": {},
"outputs": [],
"source": [
@@ -1295,7 +1295,7 @@
},
{
"cell_type": "markdown",
- "id": "fbf45dac",
+ "id": "6c45b833",
"metadata": {},
"source": [
"## Energy Resolution Analysis"
@@ -1304,7 +1304,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "6d19c0b6",
+ "id": "f9e1ea35",
"metadata": {},
"outputs": [],
"source": [
@@ -1318,7 +1318,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "0bff8c08",
+ "id": "c5451f6a",
"metadata": {},
"outputs": [],
"source": [
@@ -1348,7 +1348,7 @@
},
{
"cell_type": "markdown",
- "id": "a0d24089",
+ "id": "dd6572f5",
"metadata": {},
"source": [
"## Calibration Constants DB\n",
@@ -1358,7 +1358,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "1756684b",
+ "id": "452c9581",
"metadata": {},
"outputs": [],
"source": [
--
GitLab