From 72500bae731f00a5460da96ab226717666de8f38 Mon Sep 17 00:00:00 2001
From: Thomas Kluyver <thomas@kluyver.me.uk>
Date: Wed, 28 Oct 2020 10:39:32 +0000
Subject: [PATCH] Try using Princess to run notebook in Slurm
---
bin/slurm_calibrate.sh | 5 +++--
requirements.txt | 2 ++
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/bin/slurm_calibrate.sh b/bin/slurm_calibrate.sh
index 6c2ecfcfa..3ceb22f4d 100755
--- a/bin/slurm_calibrate.sh
+++ b/bin/slurm_calibrate.sh
@@ -45,8 +45,9 @@ then
fi
-echo "Running script"
-${python_path} -m nbconvert --to rst --ExecutePreprocessor.timeout=36000 --ExecutePreprocessor.allow_errors=True --TemplateExporter.exclude_input=True --execute ${nb_path}
+echo "Running notebook"
+${python_path} -m princess ${nb_path} --save --on-error-resume-next
+${python_path} -m nbconvert --to rst --TemplateExporter.exclude_input=True ${nb_path}
# stop the cluster if requested
if [ "${ipcluster_profile}" != "NO_CLUSTER" ]
diff --git a/requirements.txt b/requirements.txt
index 0623bb3d4..cb3a9e18d 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -24,10 +24,12 @@ jupyter-core == 4.6.1
karabo_data == 0.7.0
lxml == 4.5.0
metadata_client == 3.0.5
+nbclient == 0.5.1
nbconvert == 5.6.1
nbformat == 5.0.7
numpy == 1.19.1
prettytable == 0.7.2
+princess == 0.1
pypandoc == 1.4
python-dateutil == 2.8.1
pyyaml == 5.3
--
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