From 75f4e49963b63497298d24f377e55b611de48e6d Mon Sep 17 00:00:00 2001
From: ahmedk <karim.ahmed@xfel.eu>
Date: Mon, 5 Feb 2024 16:23:15 +0100
Subject: [PATCH] Improve fix by just discarding the axis instead of squeezing
---
notebooks/ePix100/Correction_ePix100_NBC.ipynb | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/notebooks/ePix100/Correction_ePix100_NBC.ipynb b/notebooks/ePix100/Correction_ePix100_NBC.ipynb
index 7df412a55..bc3a719f3 100644
--- a/notebooks/ePix100/Correction_ePix100_NBC.ipynb
+++ b/notebooks/ePix100/Correction_ePix100_NBC.ipynb
@@ -635,12 +635,11 @@
" \"data.trainId\", data=seq_dc.train_ids, chunks=min(50, len(seq_dc.train_ids)))\n",
" \n",
" if np.isin('data.pulseId', list(seq_dc[instrument_src].keys())): # some runs are missing 'data.pulseId'\n",
- " pulseid = seq_dc[instrument_src]['data.pulseId'].ndarray().squeeze()\n",
- " # pulseid is scalar for one train.\n",
- " pulseid = [pulseid] if not pulseid.shape else list(pulseid)\n",
- "\n",
" outp_source.create_key(\n",
- " \"data.pulseId\", data=pulseid, chunks=min(50, len(seq_dc.train_ids)))\n",
+ " \"data.pulseId\",\n",
+ " data=list(seq_dc[instrument_src]['data.pulseId'].ndarray()[:, 0]),\n",
+ " chunks=min(50, len(seq_dc.train_ids)),\n",
+ " )\n",
" \n",
" if pattern_classification:\n",
" # Add main corrected `data.image.pixels` dataset and store corrected data.\n",
--
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