From 7eb3c2599d8a9d19f577df393f97aa1fe8a9bf84 Mon Sep 17 00:00:00 2001
From: ahmedk <karim.ahmed@xfel.eu>
Date: Mon, 9 Oct 2023 11:47:31 +0200
Subject: [PATCH] fix spelling mistakes and remove unused imports
---
.../AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb | 14 ++++++--------
1 file changed, 6 insertions(+), 8 deletions(-)
diff --git a/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb b/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb
index 0d113f7b3..3af27abfd 100644
--- a/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb
+++ b/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb
@@ -50,7 +50,7 @@
"interlaced = False # assume interlaced data format, for data prior to Dec. 2017\n",
"\n",
"thresholds_offset_sigma = 3. # offset sigma thresholds for offset deduced bad pixels\n",
- "thresholds_offset_hard = [0, 0] # For setting the same threshold offset for the 3 gains. Left for backcompatability. Default [0, 0] to take the following parameters.\n",
+ "thresholds_offset_hard = [0, 0] # For setting the same threshold offset for the 3 gains. Left for backward compatibility. Default [0, 0] to take the following parameters.\n",
"thresholds_offset_hard_hg = [3000, 7000] # High-gain thresholds in absolute ADU terms for offset deduced bad pixels\n",
"thresholds_offset_hard_mg = [6000, 10000] # Medium-gain thresholds in absolute ADU terms for offset deduced bad pixels\n",
"thresholds_offset_hard_lg = [6000, 10000] # Low-gain thresholds in absolute ADU terms for offset deduced bad pixels\n",
@@ -59,14 +59,14 @@
"thresholds_offset_hard_lg_fixed = [3500, 6500] # Same as thresholds_offset_hard_lg, but for fixed gain operation\n",
"\n",
"thresholds_noise_sigma = 5. # noise sigma thresholds for offset deduced bad pixels\n",
- "thresholds_noise_hard = [0, 0] # For setting the same threshold noise for the 3 gains. Left for backcompatability. Default [0, 0] to take the following parameters.\n",
+ "thresholds_noise_hard = [0, 0] # For setting the same threshold noise for the 3 gains. Left for backward compatibility. Default [0, 0] to take the following parameters.\n",
"thresholds_noise_hard_hg = [4, 20] # High-gain thresholds in absolute ADU terms for offset deduced bad pixels\n",
"thresholds_noise_hard_mg = [4, 20] # Medium-gain thresholds in absolute ADU terms for offset deduced bad pixels\n",
"thresholds_noise_hard_lg = [4, 20] # Low-gain thresholds in absolute ADU terms for offset deduced bad pixels\n",
"\n",
"thresholds_gain_sigma = 5. # Gain separation sigma threshold\n",
- "max_trains = 550 # Maximum number of trains to use for processing dark. Set to 0 to process all available trains. 550 added for ~500GB nodes to temporarely avoid memory issues.\n",
- "min_trains = 1 # Miniumum number of trains for processing dark. If run folder has less than minimum trains, processing is stopped.\n",
+ "max_trains = 550 # Maximum number of trains to use for processing dark. Set to 0 to process all available trains. 550 added for ~500GB nodes to temporarily avoid memory issues.\n",
+ "min_trains = 1 # Minimum number of trains for processing dark. If run folder has less than minimum trains, processing is stopped.\n",
"high_res_badpix_3d = False # set this to True if you need high-resolution 3d bad pixel plots. ~7mins extra time for 64 memory cells\n",
"\n",
"# This is used if modules is not specified:\n",
@@ -97,7 +97,6 @@
"from pathlib import Path\n",
"from typing import List, Tuple\n",
"\n",
- "import dateutil.parser\n",
"import matplotlib\n",
"import numpy as np\n",
"import pasha as psh\n",
@@ -110,8 +109,8 @@
"\n",
"import iCalibrationDB\n",
"import matplotlib.pyplot as plt\n",
- "from cal_tools.agipdlib import AgipdCtrl\n",
- "from cal_tools.enums import AgipdGainMode, BadPixels\n",
+ "from cal_tools.agipdlib import AgipdCtrl, AgipdCtrlDark\n",
+ "from cal_tools.enums import BadPixels\n",
"from cal_tools.plotting import (\n",
" create_constant_overview,\n",
" plot_badpix_3d,\n",
@@ -124,7 +123,6 @@
" get_pdu_from_db,\n",
" get_random_db_interface,\n",
" get_report,\n",
- " map_gain_stages,\n",
" module_index_to_qm,\n",
" run_prop_seq_from_path,\n",
" save_const_to_h5,\n",
--
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