diff --git a/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb b/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb index 79b443debcaaf18fc488c9c84f25796cdb17abfc..52b639be6ccbc481a69df0242d96ca1441b09306 100644 --- a/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb +++ b/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb @@ -150,7 +150,7 @@ " runs_dict[run_name] = {\n", " \"number\": run_number,\n", " \"gain\": gain_idx,\n", - " \"dc\": RunDirectory(f'{in_folder}/r{run_number:04d}/', _use_voview=False)\n", + " \"dc\": RunDirectory(f'{in_folder}/r{run_number:04d}/')\n", " }\n", "\n", "creation_time=None\n", @@ -206,7 +206,7 @@ "# Create out_folder if it doesn't exist.\n", "Path(out_folder).mkdir(parents=True, exist_ok=True)\n", "\n", - "file_sizes = []\n", + "mod_image_size = []\n", "for run_dict in runs_dict.values():\n", " missing_modules = [] # modules with no images within a run.\n", " n_trains_list = [] # list of the number of trains for each module within a run.\n", @@ -230,8 +230,7 @@ " f\"for AGIPD{m:02d}, run {run_dict['number']} \")\n", "\n", " n_trains_list.append(n_trains)\n", - "\n", - " file_sizes += [os.path.getsize(f.filename) / 1e9 for f in dc.files]\n", + " mod_image_size.append(np.product(dc[instrument_src.format(m), \"image.data\"].shape) * 2 / 1e9)\n", "\n", " if max(n_trains_list) == 0:\n", " raise ValueError(f\"No images to process for run: {run_dict['number']}\")\n", @@ -242,7 +241,7 @@ "modules = [m for m in modules if m not in missing_modules]\n", "karabo_da = create_karabo_da_list(modules)\n", "\n", - "print(f\"Will process data in a total of {len(file_sizes)} files ({sum(file_sizes):.02f} GB).\")" + "print(f\"Will process data of ({sum(mod_image_size):.02f} GB).\")" ] }, { diff --git a/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_Summary.ipynb b/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_Summary.ipynb index 1957ee682bb08c25f2134d9e23fad1a4593e5539..5eb1eb2b89eecac949eb539eebc9574a7395175f 100644 --- a/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_Summary.ipynb +++ b/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_Summary.ipynb @@ -124,7 +124,9 @@ "# Get operation conditions\n", "ctrl_source = ctrl_source_template.format(karabo_id_control)\n", "\n", - "raw_dc = RunDirectory(f'{raw_folder}/r{run:04d}/', _use_voview=False)\n", + "run_folder = f'{raw_folder}/r{run:04d}/'\n", + "\n", + "raw_dc = RunDirectory(run_folder)\n", "\n", "# Read operating conditions from AGIPD00 files\n", "instrument_src_mod = [\n", @@ -145,7 +147,7 @@ "\n", "mem_cells = agipd_cond.get_num_cells()\n", "if mem_cells is None:\n", - " raise ValueError(f\"No raw images found in {raw_dc[instrument_src_mod].files}\")\n", + " raise ValueError(f\"No raw images found in {run_folder}\")\n", "if acq_rate == 0.:\n", " acq_rate = agipd_cond.get_acq_rate()\n", "if gain_setting == -1:\n", diff --git a/notebooks/REMI/REMI_Digitize_and_Transform.ipynb b/notebooks/REMI/REMI_Digitize_and_Transform.ipynb index 3425123cf597849a43ef134894b3fa5d6cfb45cf..527af9375ba5c21f54a34f65f7007f551e42aa0d 100644 --- a/notebooks/REMI/REMI_Digitize_and_Transform.ipynb +++ b/notebooks/REMI/REMI_Digitize_and_Transform.ipynb @@ -889,7 +889,6 @@ "\n", "# Take first field for detector data as sample for naming\n", "out_path = (Path(out_folder) / Path(out_filename)).resolve()\n", - "seq_len = 5000\n", "\n", "t_write = timing('write_files')\n", "t_write.__enter__()\n",