From 8cea8b1bb75ab1fc960a4bdca32e789537bb1281 Mon Sep 17 00:00:00 2001
From: Steffen Hauf <haufs@max-exfl027.desy.de>
Date: Mon, 19 Nov 2018 16:20:59 +0100
Subject: [PATCH] Add karabo data self validation to tests

---
 .../AGIPDOfflineCorrection.pdf                | Bin
 .../CORR-R0412-AGIPD00-S00000.h5.checksum     | Bin
 .../CORR-R0412-AGIPD00-S00000.h5.hist.npz     | Bin
 .../CORR-R0412-AGIPD01-S00000.h5.checksum     | Bin
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 .../CORR-R0412-AGIPD14-S00000.h5.checksum     | Bin
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 .../CORR-R0412-AGIPD15-S00000.h5.checksum     | Bin
 .../CORR-R0412-AGIPD15-S00000.h5.hist.npz     | Bin
 ...EST-TestAGIPDCorrection-20181116185424.xml |   0
 .../TestAGIPDCorrection_G/karabo.data         | Bin
 .../CORR-R0154-LPD00-S00000.h5.checksum       | Bin
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 .../CORR-R0154-LPD08-S00000.h5.checksum       | Bin
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 .../CORR-R0154-LPD09-S00000.h5.checksum       | Bin
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 .../CORR-R0154-LPD10-S00000.h5.checksum       | Bin
 .../CORR-R0154-LPD11-S00000.h5.checksum       | Bin
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 .../CORR-R0154-LPD12-S00000.h5.checksum       | Bin
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 .../CORR-R0154-LPD13-S00000.h5.checksum       | Bin
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 .../CORR-R0154-LPD14-S00000.h5.checksum       | Bin
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 .../CORR-R0154-LPD15-S00000.h5.checksum       | Bin
 .../CORR-R0154-LPD15-S00000.h5.hist.npz       | Bin
 .../LPDOfflineCorrection.pdf                  | Bin
 .../TEST-TestLPDCorrection-20181116190907.xml |   0
 .../TestLPDCorrection_G/karabo.data           | Bin
 tests/correction_base.py                      |  20 +++++++++++++-----
 68 files changed, 15 insertions(+), 5 deletions(-)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/AGIPDOfflineCorrection.pdf (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD02-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD02-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD03-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD03-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD04-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD04-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD05-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD05-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD06-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD06-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD07-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD07-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD08-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD08-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD09-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD09-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD10-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD10-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD11-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD11-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD12-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD12-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD13-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD13-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD14-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD14-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD15-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD15-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/TEST-TestAGIPDCorrection-20181116185424.xml (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/karabo.data (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD00-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD01-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD01-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD02-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD02-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD03-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD03-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD04-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD04-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD05-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD06-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD06-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD07-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD07-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD08-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD08-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD09-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD09-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD10-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD11-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD11-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD12-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD12-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD13-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD13-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD14-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD14-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD15-S00000.h5.checksum (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/CORR-R0154-LPD15-S00000.h5.hist.npz (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/LPDOfflineCorrection.pdf (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/TEST-TestLPDCorrection-20181116190907.xml (100%)
 rename tests/{artifacts => artefacts}/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/karabo.data (100%)

diff --git a/tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/AGIPDOfflineCorrection.pdf b/tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/AGIPDOfflineCorrection.pdf
similarity index 100%
rename from tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/AGIPDOfflineCorrection.pdf
rename to tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/AGIPDOfflineCorrection.pdf
diff --git a/tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.checksum b/tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.checksum
similarity index 100%
rename from tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.checksum
rename to tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.checksum
diff --git a/tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.hist.npz b/tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.hist.npz
similarity index 100%
rename from tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.hist.npz
rename to tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD00-S00000.h5.hist.npz
diff --git a/tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.checksum b/tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.checksum
similarity index 100%
rename from tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.checksum
rename to tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.checksum
diff --git a/tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.hist.npz b/tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.hist.npz
similarity index 100%
rename from tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.hist.npz
rename to tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD01-S00000.h5.hist.npz
diff --git a/tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD02-S00000.h5.checksum b/tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD02-S00000.h5.checksum
similarity index 100%
rename from tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestAGIPDCorrection_G/CORR-R0412-AGIPD02-S00000.h5.checksum
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rename from tests/artifacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/karabo.data
rename to tests/artefacts/ca3b513c64c05a29ae0f530c91b04349417c4fa0/TestLPDCorrection_G/karabo.data
diff --git a/tests/correction_base.py b/tests/correction_base.py
index 022a11342..5b336c324 100644
--- a/tests/correction_base.py
+++ b/tests/correction_base.py
@@ -6,6 +6,7 @@ import pickle
 import re
 import shutil
 import subprocess as sp
+import sys
 import unittest
 from abc import abstractmethod
 from enum import Enum
@@ -282,11 +283,11 @@ class CorrectionTestBase:
 
         print("Executing {}".format(" ".join(cmd)))
 
-        if _do_generate():
-            print("Creating data paths for artefacts")
-            cls.artefact_dir = get_artefact_dir(cls)
-            if not os.path.exists(cls.artefact_dir):
-                os.makedirs(cls.artefact_dir)
+        
+        print("Creating data paths for artefacts")
+        cls.artefact_dir = get_artefact_dir(cls)
+        if not os.path.exists(cls.artefact_dir):
+            os.makedirs(cls.artefact_dir)
 
         if args.generate_wo_execution or args.test_wo_execution:
             return
@@ -577,6 +578,15 @@ class CorrectionTestBase:
 
             _, last_train = rd.train_from_id(rd.train_ids[-1])
             test_train_info(last_train, "last_train")
+            
+    @unittest.skipIf(args.skip_karabo_data,
+                     "User requested to skip karabo data test")
+    def test_karabo_data_self_test(self):
+        """ Runs validation included in karabo data
+        """
+        out_folder = self._output_to_path()
+        sp.check_call([sys.executable, '-m',
+                       'karabo_data.validation', out_folder])
 
     @unittest.skipIf(args.skip_report_gen,
                      "User requested to skip report generation test")
-- 
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