diff --git a/xfel_calibrate/notebooks.py b/xfel_calibrate/notebooks.py
index 3f16499e089b989924e4239ea2b48f0dbabe1c52..f593a05951ff4312959102dbeda5e063a52f133a 100644
--- a/xfel_calibrate/notebooks.py
+++ b/xfel_calibrate/notebooks.py
@@ -1,223 +1,223 @@
# paths are relative to the location of setup.py in the main package
notebooks = {
- "AGIPD": {
- "DARK": {
- "notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb",
- "concurrency": {"parameter": "modules",
- "default concurrency": list(range(16)),
- "cluster cores": 8},
- },
- "PC": {
- "notebook": "notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb",
- "concurrency": {"parameter": "modules",
- "default concurrency": 16,
- "cluster cores": 32},
- },
- "FF": {
- "notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb",
- "concurrency": {"parameter": "modules",
- "default concurrency": 16,
- "cluster cores": 16},
- },
- "CORRECT": {
- "notebook": "notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb",
- "dep_notebooks": ["notebooks/AGIPD/AGIPD_Correct_and_Verify_Summary_NBC.ipynb"],
- "concurrency": {"parameter": "sequences",
- "use function": "balance_sequences",
- "default concurrency": [-1],
- "cluster cores": 16},
- },
- "COMBINE": {
- "notebook": "notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 8},
- },
- },
+ "AGIPD": {
+ "DARK": {
+ "notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb",
+ "concurrency": {"parameter": "modules",
+ "default concurrency": list(range(16)),
+ "cluster cores": 8},
+ },
+ "PC": {
+ "notebook": "notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb",
+ "concurrency": {"parameter": "modules",
+ "default concurrency": 16,
+ "cluster cores": 32},
+ },
+ "FF": {
+ "notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb",
+ "concurrency": {"parameter": "modules",
+ "default concurrency": 16,
+ "cluster cores": 16},
+ },
+ "CORRECT": {
+ "notebook": "notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb",
+ "dep_notebooks": [
+ "notebooks/AGIPD/AGIPD_Correct_and_Verify_Summary_NBC.ipynb"],
+ "concurrency": {"parameter": "sequences",
+ "use function": "balance_sequences",
+ "default concurrency": [-1],
+ "cluster cores": 16},
+ },
+ "COMBINE": {
+ "notebook": "notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 8},
+ },
+ },
- "AGIPD64K": {
- "DARK": {
- "notebook": "notebooks/AGIPD/playground/AGIPD_SingleM_test_Dark.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 4},
- },
- },
+ "AGIPD64K": {
+ "DARK": {
+ "notebook": "notebooks/AGIPD/playground/AGIPD_SingleM_test_Dark.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 4},
+ },
+ },
- "LPD": {
- "DARK": {
- "notebook": "notebooks/LPD/LPDChar_Darks_NBC.ipynb",
- "dep_notebooks": ["notebooks/LPD/LPDChar_Darks_Summary_NBC.ipynb"],
- "concurrency": {"parameter": "modules",
- "default concurrency": list(range(16)),
- "cluster cores": 8},
- },
- "PC": {
- "notebook": "notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb",
- "concurrency": {"parameter": "modules",
- "default concurrency": 16,
- "cluster cores": 32},
- },
- "FF": {
- "notebook": "notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 8},
- },
- "CORRECT": {
- "notebook": "notebooks/LPD/LPD_Correct_and_Verify.ipynb",
- "concurrency": {"parameter": "sequences",
- "default concurrency": [-1],
- "use function": "balance_sequences",
- "cluster cores": 32},
- },
- "XGM_MINE": {
- "notebook": "notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb",
- "concurrency": {"parameter": "runs",
- "use function": "create_run_list",
- "default concurrency": [-1],
- "cluster cores": 2},
- },
- },
- "PNCCD": {
- "DARK": {
- "notebook": "notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 32},
- },
- "CORRECT": {
- "notebook": "notebooks/pnCCD/Correct_pnCCD_NBC.ipynb",
- "concurrency": {"parameter": "sequences",
- "default concurrency": [-1],
- "use function": "balance_sequences",
- "cluster cores": 32},
- },
- },
- "GENERIC": {
- "DB_TO_H5": {
- "notebook": "notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 32},
- "extend parms": "extend_parms",
- },
- "STATS_FROM_DB": {
- "notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 1},
- },
- "STATS_FROM_DB2": {
- "notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb",
- "dep_notebooks": ["notebooks/generic/PlotFromCalDB_Summary_NBC.ipynb"],
- "concurrency": {"parameter": "submodules",
- "default concurrency": None,
- "cluster cores": 1},
- },
- },
- "TUTORIAL": {
- "TEST": {
- "notebook": "notebooks/Tutorial/calversion.ipynb",
- "concurrency": {"parameter": "random_seed",
- "default concurrency": None,
- "cluster cores": 4},
- },
- },
- "FASTCCD": {
- "DARK": {
- "notebook": "notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC_New_Common_Mode.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 16},
- },
- "CORRECT": {
- "notebook": "notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb",
- "concurrency": {"parameter": "sequences",
- "default concurrency": [-1],
- "use function": "balance_sequences",
- "cluster cores": 4},
- },
- },
- "JUNGFRAU": {
- "DARK": {
- "notebook": "notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 4},
- },
- "CORRECT": {
- "notebook": "notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb",
- "concurrency": {"parameter": "sequences",
- "default concurrency": [-1],
- "use function": "balance_sequences",
- "cluster cores": 14},
- },
- },
- "EPIX": {
- "DARK": {
- "notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 4},
- },
-
-
- "CORRECT": {
- "notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb",
- "concurrency": {"parameter": "sequences",
- "default concurrency": [-1],
- "use function": "balance_sequences",
- "cluster cores": 4},
- },
- },
- "EPIX100": {
- "DARK": {
- "notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 4},
- },
+ "LPD": {
+ "DARK": {
+ "notebook": "notebooks/LPD/LPDChar_Darks_NBC.ipynb",
+ "dep_notebooks": ["notebooks/LPD/LPDChar_Darks_Summary_NBC.ipynb"],
+ "concurrency": {"parameter": "modules",
+ "default concurrency": list(range(16)),
+ "cluster cores": 8},
+ },
+ "PC": {
+ "notebook": "notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb",
+ "concurrency": {"parameter": "modules",
+ "default concurrency": 16,
+ "cluster cores": 32},
+ },
+ "FF": {
+ "notebook": "notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 8},
+ },
+ "CORRECT": {
+ "notebook": "notebooks/LPD/LPD_Correct_and_Verify.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "default concurrency": [-1],
+ "use function": "balance_sequences",
+ "cluster cores": 32},
+ },
+ "XGM_MINE": {
+ "notebook": "notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb",
+ "concurrency": {"parameter": "runs",
+ "use function": "create_run_list",
+ "default concurrency": [-1],
+ "cluster cores": 2},
+ },
+ },
+ "PNCCD": {
+ "DARK": {
+ "notebook": "notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 32},
+ },
+ "CORRECT": {
+ "notebook": "notebooks/pnCCD/Correct_pnCCD_NBC.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "default concurrency": [-1],
+ "use function": "balance_sequences",
+ "cluster cores": 32},
+ },
+ },
+ "GENERIC": {
+ "DB_TO_H5": {
+ "notebook": "notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 32},
+ "extend parms": "extend_parms",
+ },
+ "STATS_FROM_DB": {
+ "notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 1},
+ },
+ "STATS_FROM_DB2": {
+ "notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb",
+ "dep_notebooks": [
+ "notebooks/generic/PlotFromCalDB_Summary_NBC.ipynb"],
+ "concurrency": {"parameter": "submodules",
+ "default concurrency": None,
+ "cluster cores": 1},
+ },
+ },
+ "TUTORIAL": {
+ "TEST": {
+ "notebook": "notebooks/Tutorial/calversion.ipynb",
+ "concurrency": {"parameter": "random_seed",
+ "default concurrency": None,
+ "cluster cores": 4},
+ },
+ },
+ "FASTCCD": {
+ "DARK": {
+ "notebook": "notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC_New_Common_Mode.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 16},
+ },
+ "CORRECT": {
+ "notebook": "notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "default concurrency": [-1],
+ "use function": "balance_sequences",
+ "cluster cores": 4},
+ },
+ },
+ "JUNGFRAU": {
+ "DARK": {
+ "notebook": "notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 4},
+ },
+ "CORRECT": {
+ "notebook": "notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "default concurrency": [-1],
+ "use function": "balance_sequences",
+ "cluster cores": 14},
+ },
+ },
+ "EPIX": {
+ "DARK": {
+ "notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 4},
+ },
- "CORRECT": {
- "notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb",
- "concurrency": {"parameter": "sequences",
- "default concurrency": [-1],
- "use function": "balance_sequences",
- "cluster cores": 4},
- },
- },
- "EPIX10K": {
- "DARK": {
- "notebook": "notebooks/ePix/Characterize_Darks_ePix10K_NBC.ipynb",
- "concurrency": {"parameter": None,
- "default concurrency": None,
- "cluster cores": 4},
- },
-
-
- "CORRECT": {
- "notebook": "notebooks/ePix/Correction_ePix10K_NBC.ipynb",
- "concurrency": {"parameter": "sequences",
- "default concurrency": [-1],
- "use function": "balance_sequences",
- "cluster cores": 4},
- }
- },
- "DSSC": {
- "DARK": {
- "notebook": "notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb",
- "concurrency": {"parameter": "modules",
- "default concurrency": list(range(16)),
- "cluster cores": 8},
- },
- "CORRECT": {
- "notebook": "notebooks/DSSC/DSSC_Correct_and_Verify.ipynb",
- "concurrency": {"parameter": "sequences",
- "use function": "balance_sequences",
- "default concurrency": [-1],
- "cluster cores": 16},
- },
- },
- }
+ "CORRECT": {
+ "notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "default concurrency": [-1],
+ "use function": "balance_sequences",
+ "cluster cores": 4},
+ },
+ },
+ "EPIX100": {
+ "DARK": {
+ "notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 4},
+ },
+
+ "CORRECT": {
+ "notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "default concurrency": [-1],
+ "use function": "balance_sequences",
+ "cluster cores": 4},
+ },
+ },
+ "EPIX10K": {
+ "DARK": {
+ "notebook": "notebooks/ePix/Characterize_Darks_ePix10K_NBC.ipynb",
+ "concurrency": {"parameter": None,
+ "default concurrency": None,
+ "cluster cores": 4},
+ },
+
+ "CORRECT": {
+ "notebook": "notebooks/ePix/Correction_ePix10K_NBC.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "default concurrency": [-1],
+ "use function": "balance_sequences",
+ "cluster cores": 4},
+ }
+ },
+ "DSSC": {
+ "DARK": {
+ "notebook": "notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb",
+ "concurrency": {"parameter": "modules",
+ "default concurrency": list(range(16)),
+ "cluster cores": 8},
+ },
+ "CORRECT": {
+ "notebook": "notebooks/DSSC/DSSC_Correct_and_Verify.ipynb",
+ "concurrency": {"parameter": "sequences",
+ "use function": "balance_sequences",
+ "default concurrency": [-1],
+ "cluster cores": 16},
+ },
+ },
+}