diff --git a/cal_tools/cal_tools/tools.py b/cal_tools/cal_tools/tools.py
index 904140d10f4d5a509690dae3f815f103c01a1cbc..681c3e2543e0b3b22bb5cd0fbf6f815f2afb4f9a 100644
--- a/cal_tools/cal_tools/tools.py
+++ b/cal_tools/cal_tools/tools.py
@@ -126,6 +126,10 @@ def make_report(run_path, tmp_path, out_path, project, author, version, report_t
                 line = line.replace("Documentation", "Calibration")
                 if ":caption." in line:
                     continue
+                if "Contents:" in line:
+                    continue
+                if line == 'Indices and tables\n':
+                    break
                 mf.write(line)
                 cdir = os.getcwd()