diff --git a/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb b/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb index c3a875eca5afdc2126b061d9fd67d037fd42b2b1..110b0ff3a49db5ce2512047e6058e9f863b6f50e 100644 --- a/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb +++ b/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb @@ -27,7 +27,7 @@ "karabo_id = \"SPB_MIC_HPVX2\" # karabo prefix of Shimadzu HPV-X2 devices\n", "\n", "# Database access parameters.\n", - "cal_db_interface = \"tcp://max-exfl-cal001:8021\" # calibration DB interface to use\n", + "cal_db_interface = \"tcp://max-exfl-cal001:8021\" # Unused, calibration DB interface to use\n", "\n", "# Correction parameters\n", "n_components = 20 # number of principal components of flat-field to use in correction\n", @@ -218,7 +218,7 @@ " # correct and write sequence files\n", " for seq_id, train_mask in sequence_trains(train_ids, 200):\n", " step_timer.start()\n", - " print('* sequience', seq_id)\n", + " print('* sequence', seq_id)\n", " seq_train_ids = train_ids[train_mask]\n", " seq_timestamps = ts[train_mask]\n", " dc_seq = dc.select_trains(by_id[seq_train_ids])\n", @@ -238,8 +238,8 @@ " for da in process_modules:\n", " instrument_source = modules[da][\"raw_source_name\"]\n", " keydata = dc_seq[instrument_source][image_key].drop_empty_trains()\n", - " count = keydata.data_counts()\n", - " i = np.flatnonzero(count.values)\n", + " count = keydata.data_counts(labelled=False)\n", + " i = np.flatnonzero(count)\n", " raw_images = keydata.select_trains(np.s_[i]).ndarray()\n", "\n", " # not pulse resolved\n",