From af2f19ebcb675b4c64c2babf3eca59054dac0391 Mon Sep 17 00:00:00 2001
From: Philipp Schmidt <philipp.schmidt@xfel.eu>
Date: Wed, 10 Apr 2024 09:43:25 +0200
Subject: [PATCH] (fixup) Minor fixes to correction notebook
---
notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb b/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb
index c3a875eca..110b0ff3a 100644
--- a/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb
+++ b/notebooks/DynamicFF/Correct_DynamicFF_NBC.ipynb
@@ -27,7 +27,7 @@
"karabo_id = \"SPB_MIC_HPVX2\" # karabo prefix of Shimadzu HPV-X2 devices\n",
"\n",
"# Database access parameters.\n",
- "cal_db_interface = \"tcp://max-exfl-cal001:8021\" # calibration DB interface to use\n",
+ "cal_db_interface = \"tcp://max-exfl-cal001:8021\" # Unused, calibration DB interface to use\n",
"\n",
"# Correction parameters\n",
"n_components = 20 # number of principal components of flat-field to use in correction\n",
@@ -218,7 +218,7 @@
" # correct and write sequence files\n",
" for seq_id, train_mask in sequence_trains(train_ids, 200):\n",
" step_timer.start()\n",
- " print('* sequience', seq_id)\n",
+ " print('* sequence', seq_id)\n",
" seq_train_ids = train_ids[train_mask]\n",
" seq_timestamps = ts[train_mask]\n",
" dc_seq = dc.select_trains(by_id[seq_train_ids])\n",
@@ -238,8 +238,8 @@
" for da in process_modules:\n",
" instrument_source = modules[da][\"raw_source_name\"]\n",
" keydata = dc_seq[instrument_source][image_key].drop_empty_trains()\n",
- " count = keydata.data_counts()\n",
- " i = np.flatnonzero(count.values)\n",
+ " count = keydata.data_counts(labelled=False)\n",
+ " i = np.flatnonzero(count)\n",
" raw_images = keydata.select_trains(np.s_[i]).ndarray()\n",
"\n",
" # not pulse resolved\n",
--
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