From c7e5284df1ad03c7e7924c95163e47a93641fcc4 Mon Sep 17 00:00:00 2001
From: ahmedk <karim.ahmed@xfel.eu>
Date: Mon, 4 Oct 2021 14:56:02 +0200
Subject: [PATCH] fix error due to conflict resolve of last MR
---
...ngfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb | 10 ++++++----
1 file changed, 6 insertions(+), 4 deletions(-)
diff --git a/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb b/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb
index cd604ac09..ecf2ee823 100644
--- a/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb
+++ b/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb
@@ -205,7 +205,10 @@
"\n",
" if mod not in noise_map:\n",
" if not manual_slow_data:\n",
- " run_path = h5path_run.format(karabo_id_control, receiver_control_id)\n",
+ " run_path = h5path_run.format(karabo_id_control, receiver_control_id)\n",
+ " with h5py.File(fp_path.format(0), 'r') as f:\n",
+ " integration_time = float(f[f'{run_path}/exposureTime/value'][()]*1e6)\n",
+ " bias_voltage = int(np.squeeze(f[f'{run_path}/vHighVoltage/value'])[0])\n",
" if r_n == run_high:\n",
" try:\n",
" gain_s = f[f'/RUN/{karabo_id_control}/DET/CONTROL/settings/value'][0].decode()\n",
@@ -229,12 +232,11 @@
" memoryCells = 16\n",
" print('Dark runs in burst mode\\n storage cell start: {:02d}'.format(sc_start))\n",
"\n",
- " noise_map[mod] = np.zeros(sensorSize+[memoryCells, 3])\n",
- " offset_map[mod] = np.zeros(sensorSize+[memoryCells, 3])\n",
+ " noise_map[mod] = np.zeros(sensorSize+[memoryCells, 3])\n",
+ " offset_map[mod] = np.zeros(sensorSize+[memoryCells, 3])\n",
"\n",
" fp_name = path_template.format(r_n, path_inset)\n",
" fp_path = '{}/{}'.format(ped_dir, fp_name)\n",
- " path = h5path\n",
"\n",
" print(\"Reading data from {}\".format(fp_path))\n",
" print(\"Run is: {}\".format(r_n))\n",
--
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