From da5ead8dacb556bc8b5a74603e2a7b0adffc5680 Mon Sep 17 00:00:00 2001
From: Cyril Danilevski <cydanil@gmail.com>
Date: Thu, 6 May 2021 19:04:45 +0200
Subject: [PATCH] Flake and isort LPD Constants Injection notebook
---
...t_calibration_constants_from_h5files.ipynb | 45 +++++++++----------
1 file changed, 20 insertions(+), 25 deletions(-)
diff --git a/notebooks/LPD/Inject_calibration_constants_from_h5files.ipynb b/notebooks/LPD/Inject_calibration_constants_from_h5files.ipynb
index cc8d2203b..463bf868c 100644
--- a/notebooks/LPD/Inject_calibration_constants_from_h5files.ipynb
+++ b/notebooks/LPD/Inject_calibration_constants_from_h5files.ipynb
@@ -21,8 +21,8 @@
"constant_names = [\"\"] # calibration constant name, required.\n",
"in_folder = \"\" # calibration constants folder, required.\n",
"out_folder = \"\" # output folder to store report path in case the notebook is executed by CLI, required.\n",
- "proposal = \"\" # Add proposal number to be sent to the database as a part of Raw data location.\n",
- "runs = [\"\"] # Add list of runs to be sent to the database as a part of Raw data location.\n",
+ "proposal = \"\" # Add proposal number to be sent to the database as a part of Raw data location.\n",
+ "runs = [\"\"] # Add list of runs to be sent to the database as a part of Raw data location.\n",
"\n",
"# detector parameters:\n",
"karabo_id = \"FXE_DET_LPD1M-1\" # detector identifier.\n",
@@ -35,8 +35,8 @@
"memory_cells = 512 # Number of memory cells. Used for constant conditions.\n",
"bias_voltage = 250 # bias voltage value. Used for constant conditions.\n",
"capacitor = 5 # capacitor value. Used for constant conditions.\n",
- "category = 0 # calibration constant source category, 0 for European XFEl and 1 for RAL. Used for constant conditions.\n",
- "photon_energy = 9.2 # calibration constant photon energy. Used for constant conditions.\n",
+ "category = 0 # calibration constant source category, 0 for European XFEl and 1 for RAL. Used for constant conditions.\n",
+ "photon_energy = 9.2 # calibration constant photon energy. Used for constant conditions.\n",
"creation_time = '2020-01-20T14:12:06' # creation time for the injected constants. required format '2019-01-20T14:12:06'"
]
},
@@ -46,23 +46,14 @@
"metadata": {},
"outputs": [],
"source": [
- "import multiprocessing\n",
- "from datetime import datetime\n",
- "from pathlib import Path\n",
- "from typing import List, Tuple\n",
- "\n",
- "import h5py\n",
- "\n",
- "from iCalibrationDB import (\n",
- " Constants,\n",
- " Conditions,\n",
- ")\n",
- "from cal_tools.tools import (\n",
- " get_from_db,\n",
- " get_pdu_from_db,\n",
- " get_report,\n",
- " send_to_db,\n",
- ")"
+ "import multiprocessing # noqa\n",
+ "from datetime import datetime # noqa\n",
+ "from pathlib import Path # noqa\n",
+ "from typing import List, Tuple # noqa\n",
+ "\n",
+ "import h5py # noqa \n",
+ "from cal_tools.tools import get_pdu_from_db, get_report, send_to_db # noqa\n",
+ "from iCalibrationDB import Conditions, Constants # noqa"
]
},
{
@@ -76,7 +67,7 @@
"if karabo_da[0].lower() == \"all\":\n",
" karabo_da = [f\"LPD{i:02d}\" for i in range(16)]\n",
"\n",
- "# if proposal or runs are given assign file_loc \n",
+ "# if proposal or runs are given assign file_loc\n",
"# for calibration constant versions metadata.\n",
"file_loc = \"\"\n",
"if proposal:\n",
@@ -102,7 +93,7 @@
" creation_time: str,\n",
" constant_names: List[str],\n",
") -> Tuple[str, datetime]:\n",
- " \n",
+ "\n",
" # Validate input parameters:\n",
" if not (in_folder):\n",
" raise ValueError(\n",
@@ -120,7 +111,10 @@
" try:\n",
" creation_time = datetime.strptime(creation_time, '%Y-%m-%dT%H:%M:%S')\n",
" except ValueError:\n",
- " raise ValueError(\"Incorrect data format, should be YYYY-MM-DDTHH:MM:SS i.e. 2019-01-20T14:12:06\")\n",
+ " raise ValueError(\n",
+ " \"Incorrect data format, \"\n",
+ " \"should be YYYY-MM-DDTHH:MM:SS i.e. 2019-01-20T14:12:06\"\n",
+ " )\n",
"\n",
" for constant in constant_names:\n",
" if not hasattr(Constants.LPD, constant):\n",
@@ -187,9 +181,10 @@
")\n",
"\n",
"# create a report path for calibration constant versions metadata.\n",
+ "report_name = f\"No_report/LPD_{datetime.now().strftime('%Y-%m-%dT%H:%M:%S')}\"\n",
"report_path = get_report(\n",
" out_folder=in_folder,\n",
- " default_path=f\"No_report/LPD_{datetime.now().strftime('%Y-%m-%dT%H:%M:%S')}\"\n",
+ " default_path=report_name\n",
")\n",
"\n",
"# Calibration constants condition object.\n",
--
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