From f2168a9fac87bd34877e6d0a474529e2c7d59ea5 Mon Sep 17 00:00:00 2001
From: Thomas Kluyver <thomas@kluyver.me.uk>
Date: Mon, 28 Nov 2022 09:40:13 +0000
Subject: [PATCH] repeat: Make --out-folder and --report-to paths absolute
---
src/xfel_calibrate/repeat.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/xfel_calibrate/repeat.py b/src/xfel_calibrate/repeat.py
index 9992ac59b..4476b5d43 100644
--- a/src/xfel_calibrate/repeat.py
+++ b/src/xfel_calibrate/repeat.py
@@ -135,12 +135,12 @@ def main(argv=None):
out_folder = parameters['out-folder']
params_to_set = {'metadata_folder': "."}
if args.out_folder:
- out_folder = parameters['out-folder'] = args.out_folder
+ out_folder = parameters['out-folder'] = os.path.abspath(args.out_folder)
params_to_set['out_folder'] = out_folder
update_notebooks_params(cal_work_dir, params_to_set)
if args.report_to:
- report_to = args.report_to
+ report_to = os.path.abspath(args.report_to)
else: # Default to saving report in output folder
report_to = str(Path(out_folder, f'xfel-calibrate-repeat-{run_uuid}'))
cal_metadata['report-path'] = f'{report_to}.pdf'
--
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