# This file is part of cfelpyutils. # # cfelpyutils is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # cfelpyutils is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with cfelpyutils. If not, see <http://www.gnu.org/licenses/>. """ Utilities for HDF5 files. This module contains utilities for the processing of HDF5. This module builds on what the h5py module already provides. """ from __future__ import (absolute_import, division, print_function, unicode_literals) import h5py import numpy def load_nparray_from_hdf5_file(data_filename, data_group): """Load a numpy.ndarray from an HDF5 file. Args: data_filename (str): filename of the file to read. data_group (str): internal HDF5 path of the data block containing the array to load. Returns: ndarray: numpy array with the data read from the file. """ try: # Open the h5py file, and try to read the data. with h5py.File(data_filename, 'r') as hdfile: nparray = numpy.array(hdfile[data_group]) hdfile.close() except: # Raise an exception in case of error. raise RuntimeError( 'Error reading file {0} (data block: {1}).'.format( data_filename, data_group ) ) else: return nparray