From 55a15e69ca7c4938063832c32f29419bfff69b36 Mon Sep 17 00:00:00 2001
From: Egor Sobolev <egor.sobolev@xfel.eu>
Date: Mon, 22 Jul 2024 17:01:43 +0200
Subject: [PATCH] Create empty mask if there is no mask in crystfel geometry
file
---
src/geomtools/detector/crystfel_frm.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/src/geomtools/detector/crystfel_frm.py b/src/geomtools/detector/crystfel_frm.py
index 6ae4e1b..0319151 100644
--- a/src/geomtools/detector/crystfel_frm.py
+++ b/src/geomtools/detector/crystfel_frm.py
@@ -4,6 +4,9 @@ import pandas as pd
from cfelpyutils.geometry import load_crystfel_geometry
from natsort import natsorted
+from .geom import get_detector_shape
+
+
HEADER_TEMPLATE = """\
; {detector} geometry file written by geomtools
; You may need to edit this file to add:
@@ -163,5 +166,8 @@ def read_crystfel_geom(filename, indexes=dict()):
(np.bitwise_and(mask, mask_goodbits) != mask_goodbits) |
(np.bitwise_and(mask, mask_badbits) != 0)
)
+ else:
+ shape = get_detector_shape(panels)
+ mask = np.zeros(shape, bool)
return panels, geom.beam, mask
--
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