diff --git a/Load.py b/Load.py
index 4aa5d18a52054171a1fc8667c4d290bce79a6b07..52f86df33934e887841076497b9be2b19a546a50 100644
--- a/Load.py
+++ b/Load.py
@@ -11,47 +11,160 @@ from karabo_data import RunDirectory
import xarray as xr
mnemonics = {
- "SCS_XGM": ['SCS_BLU_XGM/XGM/DOOCS:output', 'data.intensityTD', 1],
- "SCS_XGM_SLOW": ['SCS_BLU_XGM/XGM/DOOCS', 'pulseEnergy.photonFlux.value', 0],
- "SA3_XGM": ['SA3_XTD10_XGM/XGM/DOOCS:output', 'data.intensityTD', 1],
- "SA3_XGM_SLOW": ['SA3_XTD10_XGM/XGM/DOOCS', 'pulseEnergy.photonFlux.value', 0],
- "MCP1apd": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_D.apd.pulseIntegral', 1],
- "MCP1raw": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_D.raw.samples', 1],
- "MCP2apd": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_C.apd.pulseIntegral', 1],
- "MCP2raw": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_D.raw.samples', 1],
- "MCP3apd": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_B.apd.pulseIntegral', 1],
- "MCP3raw": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_D.raw.samples', 1],
- "MCP4apd": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_A.apd.pulseIntegral', 1],
- "MCP4raw": ['SCS_UTC1_ADQ/ADC/1:network', 'digitizers.channel_1_D.raw.samples', 1],
- "nrj": ['SA3_XTD10_MONO/MDL/PHOTON_ENERGY','actualEnergy.value', 0],
- "sase3": ['SCS_RR_UTC/MDL/BUNCH_DECODER','sase3.pulseIds.value', 1],
- "sase2": ['SCS_RR_UTC/MDL/BUNCH_DECODER','sase2.pulseIds.value', 1],
- "sase1": ['SCS_RR_UTC/MDL/BUNCH_DECODER','sase1.pulseIds.value', 1],
- "maindump": ['SCS_RR_UTC/MDL/BUNCH_DECODER','maindump.pulseIds.value', 1],
- "bunchpattern": ['SCS_RR_UTC/TSYS/TIMESERVER','readBunchPatternTable.value', 0],
- "npulses_sase3": ['SCS_RR_UTC/MDL/BUNCH_DECODER','sase3.nPulses.value',0],
- "npulses_sase1": ['SCS_RR_UTC/MDL/BUNCH_DECODER','sase1.nPulses.value',0],
- "fastccd": ['SCS_CDIDET_FCCD2M/DAQ/FCCD:daqOutput','data.image.pixels', 0],
- "transmission": ['SA3_XTD10_GATT/MDL/GATT_TRANSMISSION_MONITOR', 'Estimated_Tr.value', 0],
- "GATT_pressure": ['P_GATT', 'value.value', 0],
- "scannerX": ['SCS_CDIFFT_SAM/LMOTOR/SCANNERX', 'actualPosition.value', 0],
- "scannerY": ['SCS_CDIFFT_SAM/MOTOR/SCANNERY', 'actualPosition.value', 0],
- "scannerY_enc": ['SCS_CDIFFT_SAM/ENC/SCANNERY', 'value.value', 0],
- "magnet": ['SCS_CDIFFT_MAG/SUPPLY/CURRENT', 'actual_current.value', 0]
+ # Machine
+ "sase3": {'source':'SCS_RR_UTC/MDL/BUNCH_DECODER',
+ 'key':'sase3.pulseIds.value',
+ 'dim':['bunchId']},
+ "sase2": {'source':'SCS_RR_UTC/MDL/BUNCH_DECODER',
+ 'key':'sase2.pulseIds.value',
+ 'dim':['bunchId']},
+ "sase1": {'source':'SCS_RR_UTC/MDL/BUNCH_DECODER',
+ 'key':'sase1.pulseIds.value',
+ 'dim':['bunchId']},
+ "maindump": {'source':'SCS_RR_UTC/MDL/BUNCH_DECODER',
+ 'key':'maindump.pulseIds.value',
+ 'dim':['bunchId']},
+ "bunchpattern": {'source':'SCS_RR_UTC/TSYS/TIMESERVER',
+ 'key':'readBunchPatternTable.value',
+ 'dim':None},
+ "npulses_sase3": {'source':'SCS_RR_UTC/MDL/BUNCH_DECODER',
+ 'key':'sase3.nPulses.value',
+ 'dim':None},
+ "npulses_sase1": {'source':'SCS_RR_UTC/MDL/BUNCH_DECODER',
+ 'key':'sase1.nPulses.value',
+ 'dim':None},
+ # SA3
+ "nrj": {'source':'SA3_XTD10_MONO/MDL/PHOTON_ENERGY',
+ 'key':'actualEnergy.value',
+ 'dim':None},
+
+ "M2BEND": {'source': 'SA3_XTD10_MIRR-2/MOTOR/BENDER',
+ 'key': 'actualPosition.value',
+ 'dim':None},
+ "VSLIT": {'source':'SA3_XTD10_VSLIT/MDL/BLADE',
+ 'key':'actualGap.value',
+ 'dim':None},
+ "ESLIT": {'source':'SCS_XTD10_ESLIT/MDL/MAIN',
+ 'key':'actualGap.value',
+ 'dim':None},
+ "HSLIT": {'source':'SCS_XTD10_HSLIT/MDL/BLADE',
+ 'key':'actualGap.value',
+ 'dim':None},
+ "transmission": {'source':'SA3_XTD10_GATT/MDL/GATT_TRANSMISSION_MONITOR',
+ 'key':'Estimated_Tr.value',
+ 'dim':None},
+ "GATT_pressure": {'source':'P_GATT',
+ 'key':'value.value',
+ 'dim':None},
+
+ # XGMs
+ "SA3_XGM": {'source':'SA3_XTD10_XGM/XGM/DOOCS:output',
+ 'key':'data.intensityTD',
+ 'dim':['XGMbunchId']},
+ "SA3_XGM_SLOW": {'source':'SA3_XTD10_XGM/XGM/DOOCS',
+ 'key':'pulseEnergy.photonFlux.value',
+ 'dim':None},
+ "SCS_XGM": {'source':'SCS_BLU_XGM/XGM/DOOCS:output',
+ 'key':'data.intensityTD',
+ 'dim':['XGMbunchId']},
+ "SCS_XGM_SLOW": {'source':'SCS_BLU_XGM/XGM/DOOCS',
+ 'key':'pulseEnergy.photonFlux.value',
+ 'dim':None},
+
+ # KBS
+ "HFM_CAPB": {'source':'SCS_KBS_HFM/ASENS/CAPB',
+ 'key':'value.value',
+ 'dim':None},
+ "HFM_CAPF": {'source':'SCS_KBS_HFM/ASENS/CAPF',
+ 'key':'value.value',
+ 'dim':None},
+ "HFM_CAPM": {'source':'SCS_KBS_HFM/ASENS/CAPM',
+ 'key':'value.value',
+ 'dim':None},
+ "HFM_BENDERB": {'source':'SCS_KBS_HFM/MOTOR/BENDERB',
+ 'key':'encoderPosition.value',
+ 'dim':None},
+ "HFM_BENDERF": {'source':'SCS_KBS_HFM/MOTOR/BENDERF',
+ 'key':'encoderPosition.value',
+ 'dim':None},
+ "VFM_CAPB": {'source':'SCS_KBS_VFM/ASENS/CAPB',
+ 'key':'value.value',
+ 'dim':None},
+ "VFM_CAPF": {'source':'SCS_KBS_VFM/ASENS/CAPF',
+ 'key':'value.value',
+ 'dim':None},
+ "VFM_CAPM": {'source':'SCS_KBS_VFM/ASENS/CAPM',
+ 'key':'value.value',
+ 'dim':None},
+ "VFM_BENDERB": {'source':'SCS_KBS_VFM/MOTOR/BENDERB',
+ 'key':'encoderPosition.value',
+ 'dim':None},
+ "VFM_BENDERF": {'source':'SCS_KBS_VFM/MOTOR/BENDERF',
+ 'key':'encoderPosition.value',
+ 'dim':None},
+
+ # FFT
+ "scannerX": {'source':'SCS_CDIFFT_SAM/LMOTOR/SCANNERX',
+ 'key':'actualPosition.value',
+ 'dim':None},
+ "scannerY": {'source':'SCS_CDIFFT_SAM/MOTOR/SCANNERY',
+ 'key':'actualPosition.value',
+ 'dim':None},
+ "scannerY_enc": {'source':'SCS_CDIFFT_SAM/ENC/SCANNERY',
+ 'key':'value.value',
+ 'dim':None},
+ "SAM-Z": {'source':'SCS_CDIFFT_MOV/ENC/SAM_Z',
+ 'key':'value.value',
+ 'dim':None},
+ "magnet": {'source':'SCS_CDIFFT_MAG/SUPPLY/CURRENT',
+ 'key':'actual_current.value',
+ 'dim':None},
+
+ # FastCCD
+ "fastccd": {'source':'SCS_CDIDET_FCCD2M/DAQ/FCCD:daqOutput',
+ 'key':'data.image.pixels',
+ 'dim':['x', 'y']},
+
+ # TIM
+ "MCP1apd": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_D.apd.pulseIntegral',
+ 'dim':['apdId']},
+ "MCP1raw": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_D.raw.samples',
+ 'dim':['samplesId']},
+ "MCP2apd": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_C.apd.pulseIntegral',
+ 'dim':['apdId']},
+ "MCP2raw": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_D.raw.samples',
+ 'dim':['samplesId']},
+ "MCP3apd": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_B.apd.pulseIntegral',
+ 'dim':['apdId']},
+ "MCP3raw": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_D.raw.samples',
+ 'dim':['samplesId']},
+ "MCP4apd": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_A.apd.pulseIntegral',
+ 'dim':['apdId']},
+ "MCP4raw": {'source':'SCS_UTC1_ADQ/ADC/1:network',
+ 'key':'digitizers.channel_1_D.raw.samples',
+ 'dim': ['samplesId']}
}
-def load(fields, runNB, proposalNB, semesterNB, topic='SCS', display=False):
- """ Load a run and extract the data. Output is record array
+def load(fields, runNB, proposalNB, semesterNB, topic='SCS', display=False, validate=False):
+ """ Load a run and extract the data. Output is an xarray with aligned trainIds
Inputs:
fields: list of mnemonic strings to load specific data such as "fastccd", "SCS_XGM",
- or dictionnaries defining a custom mnemonic such as
- {"extra": ['SCS_CDIFFT_MAG/SUPPLY/CURRENT', 'actual_current.value', 0]}
+ or dictionnaries defining a custom mnemonic such as
+ {"extra": {'SCS_CDIFFT_MAG/SUPPLY/CURRENT', 'actual_current.value', None}}
runNB: run number as integer
proposalNB: string of the proposal number
semesterNB: string of the semester number where the proposal data are saved
topic: string of the topic
display: boolean, whether to show the run.info or not
+ validate: boolean, whether to run karabo-data-validate or not
Outputs:
res: an xarray DataSet with aligned trainIds
@@ -59,48 +172,48 @@ def load(fields, runNB, proposalNB, semesterNB, topic='SCS', display=False):
runFolder = '/gpfs/exfel/exp/{}/{}/{}/raw/r{:04d}/'.format(topic, semesterNB, proposalNB, runNB)
run = RunDirectory(runFolder)
- get_ipython().system('karabo-data-validate ' + runFolder)
+
+ if validate:
+ get_ipython().system('karabo-data-validate ' + runFolder)
if display:
run.info()
keys = []
vals = []
-
+
# always load pulse pattern infos
fields += ["sase1", "sase3", "npulses_sase3", "npulses_sase1"]
-
+
for f in fields:
+
if type(f) == dict:
# extracting mnemomic defined on the spot
- for k in f.keys():
- if display:
- print('Loading {}'.format(f))
-
- if f[k][2]:
- vals.append(run.get_array(f[k][0], f[k][1], extra_dims=[k+'_dim',]))
- else:
- vals.append(run.get_array(f[k][0], f[k][1]))
- keys.append(k)
+ if len(f.keys()) > 1:
+ print('Loading only one "on-the-spot" mnemonic at a time, skipping all others !')
+ k = list(f.keys())[0]
+ v = f[k]
else:
+ # extracting mnemomic from the table
if f in mnemonics:
- if f in keys:
- continue
-
- if display:
- print('Loading {}'.format(f))
-
- if mnemonics[f][0] not in run.all_sources:
- print('source {} not found in run. Skipping!'.format(mnemonics[f][0]))
- continue
-
- if mnemonics[f][2]:
- vals.append(run.get_array(mnemonics[f][0], mnemonics[f][1], extra_dims=[f+'_dim',]))
- else:
- vals.append(run.get_array(mnemonics[f][0], mnemonics[f][1]))
- keys.append(f)
+ v = mnemonics[f]
+ k = f
else:
print('Unknow mnemonic "{}". Skipping!'.format(f))
+ if k in keys:
+ continue # already loaded, skip
+
+ if display:
+ print('Loading {}'.format(k))
+
+ if v['source'] not in run.all_sources:
+ print('Source {} not found in run. Skipping!'.format(v['source']))
+ continue
+
+ vals.append(run.get_array(v['source'], v['key'], extra_dims=v['dim']))
+
+ keys.append(k)
+
aligned_vals = xr.align(*vals, join='inner')
result = dict(zip(keys, aligned_vals))
return xr.Dataset(result)