diff --git a/XAS.py b/XAS.py index 5fff047685a15e52e729b8460064f2e51d4b9c55..8f4ae67744ac79647f3ad74100f2b67d66cece94 100644 --- a/XAS.py +++ b/XAS.py @@ -10,6 +10,8 @@ """ import numpy as np +import matplotlib.gridspec as gridspec +import matplotlib.pyplot as plt def absorption(T, Io): """ Compute the absorption A = -ln(T/Io) @@ -97,7 +99,7 @@ def binning(x, data, func, bins=100, bin_length=None): return bins, res -def xas(nrun, bins=None, Iokey='SCS_SA3', Itkey='MCP3apd', nrjkey='nrj', Iooffset=0): +def xas(nrun, bins=None, Iokey='SCS_SA3', Itkey='MCP3apd', nrjkey='nrj', Iooffset=0, plot=False): """ Compute the XAS spectra from a xarray nrun. Inputs: @@ -108,6 +110,7 @@ def xas(nrun, bins=None, Iokey='SCS_SA3', Itkey='MCP3apd', nrjkey='nrj', Iooffse Itkey: string for the It fields, typically 'MCP3apd' NRJkey: string for the nrj fields, typically 'nrj' Iooffset: offset to apply on Io + plot: boolean, displays a XAS spectrum if True Outputs: a dictionnary containing: @@ -154,6 +157,29 @@ def xas(nrun, bins=None, Iokey='SCS_SA3', Itkey='MCP3apd', nrjkey='nrj', Iooffse bins_c = 0.5*(bins[1:] + bins[:-1]) + if plot: + f = plt.figure(figsize=(6.5,6)) + gs = gridspec.GridSpec(2,1,height_ratios=[4,1]) + ax1 = plt.subplot(gs[0]) + ax1.plot(bins_c, muA, color='C1', label=r'$\sigma$') + ax1.set_ylabel('XAS') + ax1.set_xlabel('Energy (eV)') + ax1.legend() + ax1_twin = ax1.twinx() + ax1_twin.bar(bins_c, nosample['muIo'], width=0.80*(bins_c[1]-bins_c[0]), + color='C1', alpha=0.2) + ax1_twin.set_ylabel('Io') + proposalNB=int(nrun.attrs['runFolder'].split('/')[-4][1:]) + runNB=int(nrun.attrs['runFolder'].split('/')[-2][1:]) + ax1.set_title('run {:d} p{:}'.format(runNB, proposalNB)) + + ax2 = plt.subplot(gs[1]) + ax2.bar(bins_c, nosample['counts'], width=0.80*(bins_c[1]-bins_c[0]), + color='C0', alpha=0.2) + ax2.set_xlabel('Energy (eV)') + ax2.set_ylabel('counts') + plt.tight_layout() + return {'nrj':bins_c, 'muA':muA, 'sterrA':sterrA, 'sigmaA':nosample['sigmaA'], 'muIo':nosample['muIo'], 'counts':nosample['counts']}