boz_parameters_job.sh

#!/bin/bash
#SBATCH -N 1
#SBATCH --partition=exfel
#SBATCH --time=12:00:00
#SBATCH --mail-type=END,FAIL
#SBATCH --output=logs/%j-%x.out

PROPOSAL=2619
DARK=$1
RUN=$2
GAIN=$3
ROISTH=${4:-1}
SATLEVEL=${5:-500}
MODULE=15

source /etc/profile.d/modules.sh
module load exfel
module load exfel_anaconda3/1.1

echo processing run $RUN
PDIR=$(find-proposal $PROPOSAL)
RDIR="$PDIR/usr/processed_runs/r$(printf '%04d' $RUN)"
mkdir $RDIR

papermill 'BOZ analysis part I.a Correction determination.ipynb' \
	$RDIR/output.ipynb \
 -p proposal $PROPOSAL -p darkrun $DARK -p run $RUN -p module $MODULE \
 -p gain $GAIN -p rois_th $ROISTH -p sat_level $SATLEVEL -k xfel