Skip to content
Snippets Groups Projects
Commit 2ccf7681 authored by Loïc Le Guyader's avatar Loïc Le Guyader
Browse files

Fix load anaconda3 depreceated environment

parent 150b06b5
No related branches found
No related tags found
1 merge request!199Simple fixes
......@@ -25,7 +25,7 @@ done
# Load xfel environment
source /etc/profile.d/modules.sh
module load exfel
module load exfel_anaconda3/1.1
module load exfel_anaconda3
echo processing run $RUN
PDIR=$(find-proposal $PROPOSAL)
......
......@@ -30,7 +30,7 @@ done
# Load xfel environment
source /etc/profile.d/modules.sh
module load exfel
module load exfel_anaconda3/1.1
module load exfel_anaconda3
echo processing run $RUN
PDIR=$(find-proposal $PROPOSAL)
......
......@@ -8,11 +8,11 @@ if [ -d $RUN_DIR ]
then
echo creating formatted .h5 file for run $RUN_NR in $RUN_DIR
# module load exfel
# module load exfel_anaconda3/1.1
# module load exfel_anaconda3
python format_data.py --run-number $RUN_NR --run-folder $RUN_DIR
#chgrp -R 60002711-part $RUN_DIR
chmod -R 777 $RUN_DIR
else
echo run folder $RUN_DIR does not exist
echo please provide a valid run number
fi
\ No newline at end of file
fi
......@@ -11,7 +11,7 @@ RUNTYPE=$3
source /etc/profile.d/modules.sh
module load exfel
module load exfel_anaconda3/1.1
module load exfel_anaconda3
echo processing modules $MODULES of run $RUN
python process_data_201007_23h.py --run-number $RUN --module ${MODULES} --runtype $RUNTYPE
......@@ -8,7 +8,7 @@ if [ $RUN ] && [ $RUNTYPE ]
echo processing run $RUN
source /etc/profile.d/modules.sh
module load exfel
module load exfel_anaconda3/1.1
module load exfel_anaconda3
sbatch ./start_job_single.sh $RUN '0 1 2 3' $RUNTYPE
sbatch ./start_job_single.sh $RUN '4 5 6 7' $RUNTYPE
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment