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SCS
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Commits
c10a789d
Commit
c10a789d
authored
5 years ago
by
Laurent Mercadier
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Enables to load without knowing semester
parent
fa56dcb6
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!47
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Load.py
+17
-9
17 additions, 9 deletions
Load.py
with
17 additions
and
9 deletions
Load.py
+
17
−
9
View file @
c10a789d
...
@@ -6,8 +6,10 @@
...
@@ -6,8 +6,10 @@
Copyright (2019) SCS Team.
Copyright (2019) SCS Team.
"""
"""
import
numpy
as
np
import
numpy
as
np
from
karabo_data
import
RunDirectory
,
by_index
from
karabo_data
import
by_index
,
open_run
,
RunDirectory
from
karabo_data.read_machinery
import
find_proposal
import
xarray
as
xr
import
xarray
as
xr
import
os
mnemonics
=
{
mnemonics
=
{
# Machine
# Machine
...
@@ -362,7 +364,7 @@ mnemonics = {
...
@@ -362,7 +364,7 @@ mnemonics = {
'
dim
'
:
[
'
gott_pId
'
,
'
pixelId
'
]}
'
dim
'
:
[
'
gott_pId
'
,
'
pixelId
'
]}
}
}
def
load
(
fields
,
runNB
,
proposalNB
,
semesterNB
,
topic
=
'
SCS
'
,
display
=
False
,
def
load
(
fields
,
runNB
,
proposalNB
,
semesterNB
=
None
,
topic
=
'
SCS
'
,
useRaw
=
True
,
display
=
False
,
validate
=
False
,
runpath
=
'
/gpfs/exfel/exp/{}/{}/{}/raw/r{:04d}/
'
,
validate
=
False
,
runpath
=
'
/gpfs/exfel/exp/{}/{}/{}/raw/r{:04d}/
'
,
subset
=
by_index
[:],
rois
=
{}):
subset
=
by_index
[:],
rois
=
{}):
"""
Load a run and extract the data. Output is an xarray with aligned trainIds
"""
Load a run and extract the data. Output is an xarray with aligned trainIds
...
@@ -371,10 +373,13 @@ def load(fields, runNB, proposalNB, semesterNB, topic='SCS', display=False,
...
@@ -371,10 +373,13 @@ def load(fields, runNB, proposalNB, semesterNB, topic='SCS', display=False,
fields: list of mnemonic strings to load specific data such as
"
fastccd
"
,
"
SCS_XGM
"
,
fields: list of mnemonic strings to load specific data such as
"
fastccd
"
,
"
SCS_XGM
"
,
or dictionnaries defining a custom mnemonic such as
or dictionnaries defining a custom mnemonic such as
{
"
extra
"
: {
'
SCS_CDIFFT_MAG/SUPPLY/CURRENT
'
,
'
actual_current.value
'
, None}}
{
"
extra
"
: {
'
SCS_CDIFFT_MAG/SUPPLY/CURRENT
'
,
'
actual_current.value
'
, None}}
runNB: run number as integer
runNB: (str, int) run number as integer
proposalNB: string or int of the proposal number e.g.
'
p002252
'
or 2252
proposalNB: (str, int) of the proposal number e.g.
'
p002252
'
or 2252
semesterNB: string or int of the semester number where the proposal data are saved
semesterNB: (str, int) optional, depricated. The semester number where the proposal
topic: string of the topic
data are saved. Depricated since karabo_data version 0.5
topic: string of the topic.
useRaw: (bool) if True, access data from
'
raw
'
folder of the run, otherwise
from
'
proc
'
folder (for processed data)
display: boolean, whether to show the run.info or not
display: boolean, whether to show the run.info or not
validate: boolean, whether to run karabo-data-validate or not
validate: boolean, whether to run karabo-data-validate or not
runpath: a string to fromat the run folder path with topic,
runpath: a string to fromat the run folder path with topic,
...
@@ -389,10 +394,13 @@ def load(fields, runNB, proposalNB, semesterNB, topic='SCS', display=False,
...
@@ -389,10 +394,13 @@ def load(fields, runNB, proposalNB, semesterNB, topic='SCS', display=False,
Outputs:
Outputs:
res: an xarray DataSet with aligned trainIds
res: an xarray DataSet with aligned trainIds
"""
"""
if
type
(
proposalNB
)
==
int
:
if
isinstance
(
runNB
,
int
):
runNB
=
'
r{:04d}
'
.
format
(
runNB
)
if
isinstance
(
proposalNB
,
int
):
proposalNB
=
'
p{:06d}
'
.
format
(
proposalNB
)
proposalNB
=
'
p{:06d}
'
.
format
(
proposalNB
)
runFolder
=
runpath
.
format
(
topic
,
semesterNB
,
proposalNB
,
runNB
)
dataSubFolder
=
'
raw
'
if
useRaw
else
'
proc
'
runFolder
=
os
.
path
.
join
(
find_proposal
(
proposalNB
),
dataSubFolder
,
runNB
)
run
=
RunDirectory
(
runFolder
).
select_trains
(
subset
)
run
=
RunDirectory
(
runFolder
).
select_trains
(
subset
)
if
validate
:
if
validate
:
...
...
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