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Commit caa60499 authored by Loïc Le Guyader's avatar Loïc Le Guyader
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Fix load anaconda3 depreceated environment

parent d5cc0627
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...@@ -25,7 +25,7 @@ done ...@@ -25,7 +25,7 @@ done
# Load xfel environment # Load xfel environment
source /etc/profile.d/modules.sh source /etc/profile.d/modules.sh
module load exfel module load exfel
module load exfel_anaconda3/1.1 module load exfel_anaconda3
echo processing run $RUN echo processing run $RUN
PDIR=$(find-proposal $PROPOSAL) PDIR=$(find-proposal $PROPOSAL)
......
...@@ -30,7 +30,7 @@ done ...@@ -30,7 +30,7 @@ done
# Load xfel environment # Load xfel environment
source /etc/profile.d/modules.sh source /etc/profile.d/modules.sh
module load exfel module load exfel
module load exfel_anaconda3/1.1 module load exfel_anaconda3
echo processing run $RUN echo processing run $RUN
PDIR=$(find-proposal $PROPOSAL) PDIR=$(find-proposal $PROPOSAL)
......
...@@ -8,11 +8,11 @@ if [ -d $RUN_DIR ] ...@@ -8,11 +8,11 @@ if [ -d $RUN_DIR ]
then then
echo creating formatted .h5 file for run $RUN_NR in $RUN_DIR echo creating formatted .h5 file for run $RUN_NR in $RUN_DIR
# module load exfel # module load exfel
# module load exfel_anaconda3/1.1 # module load exfel_anaconda3
python format_data.py --run-number $RUN_NR --run-folder $RUN_DIR python format_data.py --run-number $RUN_NR --run-folder $RUN_DIR
#chgrp -R 60002711-part $RUN_DIR #chgrp -R 60002711-part $RUN_DIR
chmod -R 777 $RUN_DIR chmod -R 777 $RUN_DIR
else else
echo run folder $RUN_DIR does not exist echo run folder $RUN_DIR does not exist
echo please provide a valid run number echo please provide a valid run number
fi fi
\ No newline at end of file
...@@ -11,7 +11,7 @@ RUNTYPE=$3 ...@@ -11,7 +11,7 @@ RUNTYPE=$3
source /etc/profile.d/modules.sh source /etc/profile.d/modules.sh
module load exfel module load exfel
module load exfel_anaconda3/1.1 module load exfel_anaconda3
echo processing modules $MODULES of run $RUN echo processing modules $MODULES of run $RUN
python process_data_201007_23h.py --run-number $RUN --module ${MODULES} --runtype $RUNTYPE python process_data_201007_23h.py --run-number $RUN --module ${MODULES} --runtype $RUNTYPE
...@@ -8,7 +8,7 @@ if [ $RUN ] && [ $RUNTYPE ] ...@@ -8,7 +8,7 @@ if [ $RUN ] && [ $RUNTYPE ]
echo processing run $RUN echo processing run $RUN
source /etc/profile.d/modules.sh source /etc/profile.d/modules.sh
module load exfel module load exfel
module load exfel_anaconda3/1.1 module load exfel_anaconda3
sbatch ./start_job_single.sh $RUN '0 1 2 3' $RUNTYPE sbatch ./start_job_single.sh $RUN '0 1 2 3' $RUNTYPE
sbatch ./start_job_single.sh $RUN '4 5 6 7' $RUNTYPE sbatch ./start_job_single.sh $RUN '4 5 6 7' $RUNTYPE
......
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