Improving SLURM based notebooks and scripts

• add printing of python path for SLURM notebooks since the metadata kernel name is not necessarily the kernel that was used to run the notebook via papermill
• slurm scripts now uses named option to pass arguments
• slurm scripts now correctly specify the kernel name for papermill
• slurm scripts now convert string to int or float, removing the need to convert them in the notebook
• if the kernel is not defined, slurm scripts will try to define one based on the proposal number

Close #47 (closed)

doc/scripts/bin_dssc_module_job.sh

@@ -7,19 +7,19 @@
 
 while getopts ":p:d:r:k:g:t:s:m:" option
 do
-	  case $option in
-		    p) PROPOSAL="$OPTARG";;
-		    d) DARK="$OPTARG";;
-		    r) RUN="$OPTARG";;
-		    k) KERNEL="$OPTARG";;
-		    m) MODULE_GROUP="$OPTARG";;
-				x) XAXIS="$OPTARG";;
-				b) BINWIDTH="$OPTARG";;
-		    \?) echo "Unknown option"
-				    exit 1;;
-		    :) echo "Missing option for input flag"
-			     exit 1;;
-	  esac
+    case $option in
+        p) PROPOSAL="$OPTARG";;
+        d) DARK="$OPTARG";;
+        r) RUN="$OPTARG";;
+        k) KERNEL="$OPTARG";;
+        m) MODULE_GROUP="$OPTARG";;
+        x) XAXIS="$OPTARG";;
+        b) BINWIDTH="$OPTARG";;
+        \?) echo "Unknown option"
+            exit 1;;
+        :) echo "Missing option for input flag"
+           exit 1;;
+    esac
 done
 
 # Load xfel environment