commit c7e948a9
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Sep 13 14:59:07 2023 +0200

    Overhaul context warning lamps, add to arbiter kernel

commit 08353704
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Sep 12 09:56:11 2023 +0200

    Arbiter kernels call super().__init__

commit d113cd10
Merge: 8e1508ca fbe20f97
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Sep 12 09:54:34 2023 +0200

    Merge branch 'master' into train-picker-device

commit 8e1508ca
Merge: 45cb6810 fe4589be
Author: David Hammer <david.hammer@xfel.eu>
Date:   Thu Sep 7 11:23:34 2023 +0200

    Merge branch 'feed-parameter-optimizer' into 'train-picker-device'

    Interface CrystFEL with Karabo and allow automatic parameter tunning with rcrystfel

    See merge request !59

commit 45cb6810
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Sep 6 13:36:15 2023 +0200

    PickyBoi goes to another repository

commit fe4589be
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Sep 6 11:02:34 2023 +0200

    Move PickyBoi to own repository

commit 4ed8c643
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Sep 6 10:56:44 2023 +0200

    Move CrystfelRunner to crystfel-integration

commit 2e29b821
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 17:22:36 2023 +0200

    Using get instead of unsafe_get

commit 4db44ada
Merge: 91232763 e3d4a37f
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 17:16:03 2023 +0200

    Merged.

commit 91232763
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 17:12:46 2023 +0200

    Filter data by source in PickyBoi.

commit e3d4a37f
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Sep 5 17:04:29 2023 +0200

    PickyBoi: add source filter, format

commit 1bc121cf
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 16:40:30 2023 +0200

    Removed the CrystfelORchestrator: rcrystfel is interacting with all devices directly.

commit f6a7655e
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 16:16:20 2023 +0200

    Re-create the ZMQ server to be sure everything has been processed.

commit d371317d
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 15:09:38 2023 +0200

    Be less verbose.

commit e06ba684
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 14:16:06 2023 +0200

    Avoid setting NDARRAY properties: they cannot be serialized in JSON.

commit 0e8aee4c
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 13:33:30 2023 +0200

    Make breakStreamAfterEnd reconfigurable.

commit 7920c582
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 13:19:44 2023 +0200

    Send end of stream signal when all trains were caught too.

commit 93e276c3
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 13:19:24 2023 +0200

    Clean up before shut down and don't start streaming by default.

commit 36bcf881
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 11:40:07 2023 +0200

    Use USR1 to end CrystFEL instead.

commit 72c7a883
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Sep 5 11:23:50 2023 +0200

    Fixed defunct CrystFEL process, by requesting its status code. Added debug messages. Keeping the ZMQ stream open, as it is unnecessary to close it.

commit 1f8de2b6
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Mon Sep 4 18:55:40 2023 +0200

    Removed debug message.

commit 282b7546
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Mon Sep 4 18:55:15 2023 +0200

    Releasing all resources almost cleanly.

commit d49a4f0c
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Mon Sep 4 13:23:40 2023 +0200

    Fixed logic for breaking the stream.

commit 60350c66
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Mon Sep 4 11:16:42 2023 +0200

    Set state after ending the stream.

commit b5856348
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Mon Sep 4 10:56:14 2023 +0200

    Signal end of stream.

commit 4569f9bd
Author: David Hammer <dhammer@mailbox.org>
Date:   Thu Aug 31 15:00:01 2023 +0200

    Get rid of dataFormat, use shape of data or look at geometry

commit 4adafc84
Author: David Hammer <dhammer@mailbox.org>
Date:   Thu Aug 31 14:58:27 2023 +0200

    Improve temporary file handling

commit 9a6c6000
Author: David Hammer <dhammer@mailbox.org>
Date:   Thu Aug 31 11:16:36 2023 +0200

    Add buildGeometry slot to CrystfelRunner

commit e83011e1
Author: David Hammer <dhammer@mailbox.org>
Date:   Thu Aug 31 10:24:02 2023 +0200

    Only update output channel once per input

commit b0b5aad7
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 17:42:20 2023 +0200

    Remove tail_proc, as we read the file directly.

commit e516c9d2
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 17:38:48 2023 +0200

    Allow reconfiguration of CrystFEL parameters without shutting down the device.

commit df0f4116
Merge: 89adb332 cbb4a7cf
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 17:17:05 2023 +0200

    Merge branch 'feed-parameter-optimizer' of ssh://git.xfel.eu:10022/calibration/calng into feed-parameter-optimizer

commit 89adb332
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 17:16:40 2023 +0200

    Prevent bugfix from messing -j option.

commit cbb4a7cf
Merge: 1c8f21cb d6cef850
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Aug 30 17:10:57 2023 +0200

    Merge branch 'feed-parameter-optimizer' of ssh://git.xfel.eu:10022/calibration/calng into feed-parameter-optimizer

commit 1c8f21cb
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Aug 30 17:10:50 2023 +0200

    Allow TrainRatioTracker to see the same train again

commit d6cef850
Merge: 40c598cf 85ee451d
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 17:00:14 2023 +0200

    Merge branch 'feed-parameter-optimizer' of ssh://git.xfel.eu:10022/calibration/calng into feed-parameter-optimizer

commit 40c598cf
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 17:00:09 2023 +0200

    Bug fix reading data path: we have to avoid reading spaces and the comment character.

commit 85ee451d
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Aug 30 16:17:13 2023 +0200

    Allow PickyBoi to handle multiple data per input

commit cf627845
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 15:59:05 2023 +0200

    Many bug fixes.

commit 8356ad4b
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 12:33:53 2023 +0200

    Fixed initial NDARRAY setting for cell.

commit e35f9a02
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 12:18:10 2023 +0200

    ADapted initial value of the detCentre.

commit 4f8bce30
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Wed Aug 30 11:31:28 2023 +0200

    Merged output parser.

commit 42a7ce6e
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Aug 29 17:12:40 2023 +0200

    Added detailed stats output.

commit ccae52c5
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Aug 29 15:35:23 2023 +0200

    Removed unitcellPath

commit 91138012
Author: Danilo Ferreira de Lima <danilo.enoque.ferreira.de.lima@xfel.de>
Date:   Tue Aug 29 15:28:34 2023 +0200

    Keep only a misc set of parameters and leave indexing and peakfinding to be sent in misc.

commit 17c5bded
Author: David Hammer <dhammer@mailbox.org>
Date:   Thu Aug 24 14:29:39 2023 +0200

    Start work on CrystfelOrchestrator

    When behind a WebProxy, this will serve as a single endpoint for a REST API to
    control the whole CrystFEL setup.

commit dc74d5b0
Author: David Hammer <dhammer@mailbox.org>
Date:   Thu Aug 24 11:08:56 2023 +0200

    Removing unuseful test device

    Testing of the bridge part of the code is much more convenient to (copy-paste
    into and) run in a notebook; just use a kernel based on the Karabo environment.

commit 6b29320f
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Aug 23 13:37:53 2023 +0200

    Fix queue length counting, change name

commit 6d26c1e3
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Aug 23 13:37:42 2023 +0200

    Enable sending image data

commit 727d7fd8
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Aug 22 22:12:42 2023 +0200

    Fix merge errors

commit 26d2fee5
Merge: 3f1afea9 02aebda9
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Aug 11 18:09:12 2023 +0200

    Merge branch 'train-picker-device' into feed-parameter-optimizer

commit 3f1afea9
Merge: 619a3d5c 1405aadc
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Aug 11 18:08:56 2023 +0200

    Merge branch 'master' into crystfel-adapter

commit 619a3d5c
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Aug 11 17:53:42 2023 +0200

    Fix states, slots, add crystfelStats

commit 61f206e1
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Aug 11 17:29:16 2023 +0200

    Add slots to start, stop CrystFEL and reset queue

commit 02aebda9
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Aug 2 13:08:15 2023 +0200

    Allow selecting one train from range and adding offset to PPU

commit 693698c2
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Aug 2 12:48:04 2023 +0200

    Add error handling when getting initial PPU configuration

commit ba108b3c
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Aug 1 12:48:17 2023 +0200

    Revert arbiter use of device client, work with existing matching

commit a408d2a8
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Jul 31 19:23:58 2023 +0200

    PickyBoi: track incoming trains

commit 6e799fc7
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Jul 31 19:22:48 2023 +0200

    PickyBoi: enable following PPU device

commit 9c861a3a
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jul 26 18:28:44 2023 +0200

    Sketch PPU frame selection arbiter kernel

commit 9d7454bb
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jul 26 18:28:29 2023 +0200

    Pass device to arbiter kernels for DeviceClient

commit 223ebb7a
Merge: 5e4b34aa 26b97f12
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jul 26 17:56:19 2023 +0200

    Merge branch 'train-picker-device' of ssh://git.xfel.eu:10022/calibration/calng into train-picker-device

commit 5e4b34aa
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jul 26 14:57:31 2023 +0200

    Minor fixes

commit 45556239
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Jul 24 17:07:20 2023 +0200

    Allow multiple consecutive trains

commit 025899b3
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Jul 21 19:20:35 2023 +0200

    Start sketching changes based on dev meeting

commit 7a2231e7
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Jul 7 11:18:59 2023 +0200

    Add prototype train ID picking device

commit 26b97f12
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jul 26 14:57:31 2023 +0200

    Minor fixes

commit 2bb185c0
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Jul 24 17:07:20 2023 +0200

    Allow multiple consecutive trains

commit ca4f12eb
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Jul 21 19:20:35 2023 +0200

    Start sketching changes based on dev meeting

commit a8b13319
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Jul 7 11:18:59 2023 +0200

    Add prototype train ID picking device

commit 97d359d9
Author: David Hammer <dhammer@mailbox.org>
Date:   Thu Jun 15 16:54:31 2023 +0200

    Almost there

commit c8e9e133
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jun 14 23:23:58 2023 +0200

    Read some things from geometry, filter tail output

commit c8c314b7
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jun 14 18:09:55 2023 +0200

    WIP closer to running nicely

commit 0399c429
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Jun 9 16:55:40 2023 +0200

    Start working towards streaming to CrystFEL

commit 60024124
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Apr 14 12:52:20 2023 +0200

    Add generic arbiter kernels: reduce-threshold and boolean

commit dc2e5e5f
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 31 12:54:59 2023 +0200

    Add post-reshape hook, a few docstrings

commit ab9ebc69
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 31 09:48:47 2023 +0200

    Moving frame selection arbiter kernels to entry point structure

commit 57ce4b61
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Mar 21 15:34:10 2023 +0100

    Hotfix from SPB: always nd.array the mask (can be VECTOR_BOOL)

commit c15bbc65
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 19:26:22 2023 +0100

    Add rough peakfinder9 implementation

commit 8e51b499
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 19:25:44 2023 +0100

    Fix usage of _enabled_addons, allow time for init

commit 8ebc1ff8
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 19:25:25 2023 +0100

    Move grid computation to utils

commit 4b550e35
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 15:42:22 2023 +0100

    Fix pep8 warnings for setup.py

commit 9d04d20e
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 15:23:06 2023 +0100

    (Ab)use entry point extras to specify detectors

    TODO: add boilerplate to remaining detectors.  For now, AGIPD will have both
    IntetgratedIntensityAddon and RandomFramesAddon whereas DSSC only has RandomFramesAddon.

commit e0a8c905
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 13:51:28 2023 +0100

    Provide correction device plugins as entry points

commit a2f7534f
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 11:50:46 2023 +0100

    Fix device schema injection, add reconfigure hook, add random plugin

commit 90a1270f
Merge: 14f0b611 ff952c76
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 09:34:03 2023 +0100

    Merge branch 'frame-selection' of ssh://git.xfel.eu:10022/calibration/calng into frame-selection

commit 14f0b611
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Feb 17 14:59:12 2023 +0100

    Make sure the mask is boolean

commit 7911e10a
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Feb 14 15:23:52 2023 +0100

    Prototype configurable frame selection arbiter

commit 4f78506f
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Feb 13 19:42:00 2023 +0100

    Add sketch of correction device addon structure

commit ff952c76
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Feb 17 14:59:12 2023 +0100

    Make sure the mask is boolean

commit c3d2d437
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Feb 14 15:23:52 2023 +0100

    Prototype configurable frame selection arbiter

commit ba6eaa9f
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Feb 13 19:42:00 2023 +0100

    Add sketch of correction device addon structure

commit 1a17a737
Author: David Hammer <dhammer@mailbox.org>
Date:   Wed Jun 28 14:27:53 2023 +0200

    Describe arbiter kernel API

commit 44abfdb9
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Jun 27 14:16:57 2023 +0200

    Reorder correct / preview / reshape

commit cb902408
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Jun 27 11:13:06 2023 +0200

    Start documenting correction addons

commit 81d95bfb
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Jun 27 10:36:18 2023 +0200

    Move preview generation before addons to avoid interference

commit 60024124
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Apr 14 12:52:20 2023 +0200

    Add generic arbiter kernels: reduce-threshold and boolean

commit dc2e5e5f
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 31 12:54:59 2023 +0200

    Add post-reshape hook, a few docstrings

commit ab9ebc69
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 31 09:48:47 2023 +0200

    Moving frame selection arbiter kernels to entry point structure

commit 57ce4b61
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Mar 21 15:34:10 2023 +0100

    Hotfix from SPB: always nd.array the mask (can be VECTOR_BOOL)

commit c15bbc65
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 19:26:22 2023 +0100

    Add rough peakfinder9 implementation

commit 8e51b499
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 19:25:44 2023 +0100

    Fix usage of _enabled_addons, allow time for init

commit 8ebc1ff8
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 19:25:25 2023 +0100

    Move grid computation to utils

commit 4b550e35
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Mar 20 15:42:22 2023 +0100

    Fix pep8 warnings for setup.py

commit 9d04d20e
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 15:23:06 2023 +0100

    (Ab)use entry point extras to specify detectors

    TODO: add boilerplate to remaining detectors.  For now, AGIPD will have both
    IntetgratedIntensityAddon and RandomFramesAddon whereas DSSC only has RandomFramesAddon.

commit e0a8c905
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 13:51:28 2023 +0100

    Provide correction device plugins as entry points

commit a2f7534f
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 11:50:46 2023 +0100

    Fix device schema injection, add reconfigure hook, add random plugin

commit 90a1270f
Merge: 14f0b611 ff952c76
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Mar 17 09:34:03 2023 +0100

    Merge branch 'frame-selection' of ssh://git.xfel.eu:10022/calibration/calng into frame-selection

commit 14f0b611
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Feb 17 14:59:12 2023 +0100

    Make sure the mask is boolean

commit 7911e10a
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Feb 14 15:23:52 2023 +0100

    Prototype configurable frame selection arbiter

commit 4f78506f
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Feb 13 19:42:00 2023 +0100

    Add sketch of correction device addon structure

commit ff952c76
Author: David Hammer <dhammer@mailbox.org>
Date:   Fri Feb 17 14:59:12 2023 +0100

    Make sure the mask is boolean

commit c3d2d437
Author: David Hammer <dhammer@mailbox.org>
Date:   Tue Feb 14 15:23:52 2023 +0100

    Prototype configurable frame selection arbiter

commit ba6eaa9f
Author: David Hammer <dhammer@mailbox.org>
Date:   Mon Feb 13 19:42:00 2023 +0100

    Add sketch of correction device addon structure