Stripping some trailing spaces

notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb

@@ -136,7 +136,7 @@
     "gains = np.arange(3)\n",
     "\n",
     "max_cells = mem_cells\n",
-    "   \n",
+    "\n",
     "offset_runs = OrderedDict()\n",
     "offset_runs[\"high\"] = run_high\n",
     "offset_runs[\"med\"] = run_med\n",
@@ -204,7 +204,7 @@
     "                gsettings.append(get_gain_setting(control_fname, h5path_ctrl))\n",
     "            if not all(g == gsettings[0] for g in gsettings):\n",
     "                raise ValueError(f\"Different gain settings for the 3 input runs {gsettings}\")\n",
-    "            gain_setting =  gsettings[0]  \n",
+    "            gain_setting =  gsettings[0]\n",
     "        except Exception as e:\n",
     "            print(f'Error while reading gain setting from: \\n{control_fname}')\n",
     "            print(f'Error: {e}')\n",
@@ -229,7 +229,7 @@
     "h5path = h5path.format(karabo_id, receiver_id)\n",
     "h5path_idx = h5path_idx.format(karabo_id, receiver_id)\n",
     "\n",
-    "if bias_voltage == 0: \n",
+    "if bias_voltage == 0:\n",
     "    # Read the bias voltage from files, if recorded.\n",
     "    # If not available, make use of the historical voltage the detector is running at\n",
     "    bias_voltage = get_bias_voltage(control_names[0], karabo_id_control)\n",
@@ -621,15 +621,15 @@
     "                                          acquisition_rate=acq_rate,\n",
     "                                          gain_setting=gain_setting)\n",
     "        if db_output:\n",
-    "            md = send_to_db(db_module, karabo_id, dconst, condition, file_loc, \n",
+    "            md = send_to_db(db_module, karabo_id, dconst, condition, file_loc,\n",
     "                            report, cal_db_interface, creation_time=creation_time,\n",
     "                            timeout=cal_db_timeout)\n",
     "\n",
     "        if local_output:\n",
-    "            md = save_const_to_h5(db_module, karabo_id, dconst, condition, dconst.data, \n",
+    "            md = save_const_to_h5(db_module, karabo_id, dconst, condition, dconst.data,\n",
     "                                  file_loc, report, creation_time, out_folder)\n",
     "            print(f\"Calibration constant {const} is stored locally.\\n\")\n",
-    "            \n",
+    "\n",
     "    print(\"Constants parameter conditions are:\\n\")\n",
     "    print(f\"• memory_cells: {max_cells}\\n• bias_voltage: {bias_voltage}\\n\"\n",
     "          f\"• acquisition_rate: {acq_rate}\\n• gain_setting: {gain_setting}\\n\"\n",
@@ -724,18 +724,18 @@
     "        BadPixels.OFFSET_OUT_OF_THRESHOLD.value: (BadPixels.OFFSET_OUT_OF_THRESHOLD.name, '#00FF0080'),\n",
     "        BadPixels.GAIN_THRESHOLDING_ERROR.value: (BadPixels.GAIN_THRESHOLDING_ERROR.name, '#FF40FF40'),\n",
     "        BadPixels.OFFSET_OUT_OF_THRESHOLD.value | BadPixels.NOISE_OUT_OF_THRESHOLD.value: ('OFFSET_OUT_OF_THRESHOLD + NOISE_OUT_OF_THRESHOLD', '#DD00DD80'),\n",
-    "        BadPixels.OFFSET_OUT_OF_THRESHOLD.value | BadPixels.NOISE_OUT_OF_THRESHOLD.value | \n",
+    "        BadPixels.OFFSET_OUT_OF_THRESHOLD.value | BadPixels.NOISE_OUT_OF_THRESHOLD.value |\n",
     "        BadPixels.GAIN_THRESHOLDING_ERROR.value: ('MIXED', '#BFDF009F')}\n",
     "\n",
     "if high_res_badpix_3d:\n",
     "    display(Markdown(\"\"\"\n",
-    "    \n",
+    "\n",
     "    ## Global Bad Pixel Behaviour ##\n",
     "\n",
-    "    The following plots show the results of bad pixel evaluation for all evaluated memory cells. \n",
-    "    Cells are stacked in the Z-dimension, while pixels values in x/y are rebinned with a factor of 2. \n",
-    "    This excludes single bad pixels present only in disconnected pixels. \n",
-    "    Hence, any bad pixels spanning at least 4 pixels in the x/y-plane, or across at least two memory cells are indicated. \n",
+    "    The following plots show the results of bad pixel evaluation for all evaluated memory cells.\n",
+    "    Cells are stacked in the Z-dimension, while pixels values in x/y are rebinned with a factor of 2.\n",
+    "    This excludes single bad pixels present only in disconnected pixels.\n",
+    "    Hence, any bad pixels spanning at least 4 pixels in the x/y-plane, or across at least two memory cells are indicated.\n",
     "    Colors encode the bad pixel type, or mixed type.\n",
     "\n",
     "    \"\"\"))\n",
@@ -848,10 +848,10 @@
     "            for bit in bits:\n",
     "                l_data_old.append(np.count_nonzero(old_const['BadPixelsDark'][:, :, :, gain] & bit.value))\n",
     "\n",
-    "        l_data_name = ['All bad pixels', 'NOISE_OUT_OF_THRESHOLD', \n",
+    "        l_data_name = ['All bad pixels', 'NOISE_OUT_OF_THRESHOLD',\n",
     "                       'OFFSET_OUT_OF_THRESHOLD', 'OFFSET_NOISE_EVAL_ERROR', 'GAIN_THRESHOLDING_ERROR']\n",
     "\n",
-    "        l_threshold = ['', f'{thresholds_noise_sigma}' f'{thresholds_noise_hard[gain]}', \n",
+    "        l_threshold = ['', f'{thresholds_noise_sigma}' f'{thresholds_noise_hard[gain]}',\n",
     "                       f'{thresholds_offset_sigma}' f'{thresholds_offset_hard[gain]}',\n",
     "                       '', f'{thresholds_gain_sigma}']\n",
     "\n",
@@ -874,9 +874,9 @@
     "\n",
     "'''))\n",
     "if len(table)>0:\n",
-    "    md = display(Latex(tabulate.tabulate(table, tablefmt='latex', \n",
-    "                                         headers=[\"Pixel type\", \"Threshold\", \n",
-    "                                                  \"New constant\", \"Old constant\"])))  "
+    "    md = display(Latex(tabulate.tabulate(table, tablefmt='latex',\n",
+    "                                         headers=[\"Pixel type\", \"Threshold\",\n",
+    "                                                  \"New constant\", \"Old constant\"])))"
    ]
   },
   {
@@ -885,9 +885,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "header = ['Parameter', \n",
-    "          \"New constant\", \"Old constant \", \n",
-    "          \"New constant\", \"Old constant \", \n",
+    "header = ['Parameter',\n",
+    "          \"New constant\", \"Old constant \",\n",
+    "          \"New constant\", \"Old constant \",\n",
     "          \"New constant\", \"Old constant \",\n",
     "          \"New constant\", \"Old constant \"]\n",
     "\n",
@@ -897,15 +897,15 @@
     "    ['Offset', 'Noise', 'ThresholdsDark']\n",
     "\n",
     "for const in constants:\n",
-    "    \n",
+    "\n",
     "    if const == 'ThresholdsDark':\n",
     "        table = [['','HG-MG threshold', 'HG-MG threshold', 'MG-LG threshold', 'MG-LG threshold']]\n",
-    "    else:        \n",
+    "    else:\n",
     "        table = [['','High gain', 'High gain', 'Medium gain', 'Medium gain', 'Low gain', 'Low gain']]\n",
     "\n",
     "    for qm in res.keys():\n",
     "        data = np.copy(res[qm][const])\n",
-    "        \n",
+    "\n",
     "        if const == 'ThresholdsDark':\n",
     "            data[...,0][res[qm]['BadPixelsDark'][...,0]>0] = np.nan\n",
     "            data[...,1][res[qm]['BadPixelsDark'][...,1]>0] = np.nan\n",
@@ -938,7 +938,7 @@
     "            table.append(line)\n",
     "\n",
     "    display(Markdown('### {} [ADU], good pixels only ###'.format(const)))\n",
-    "    md = display(Latex(tabulate.tabulate(table, tablefmt='latex', headers=header)))  "
+    "    md = display(Latex(tabulate.tabulate(table, tablefmt='latex', headers=header)))"
    ]
   }
  ],