improve code reference

docs/code_reference/cal_tools.md

-# Calibration tools
-
-::: cal_tools.gotthard2.gotthard2lib
-
-::: cal_tools.epix100.epix100lib
-
-::: cal_tools.tools
\ No newline at end of file

docs/code_reference/calcat_interface.md

-# CalCAT Interface
-
-
-??? Note "This module help in skipping calibrationDBRemote"
-    ![Calibration DB Remote avoided](static/../../static/xfel_calibrate_diagrams/xfel-calibrate_cli_process_no_caldbremote.png)
-
-
-::: cal_tools.calcat_interface
\ No newline at end of file

docs/gen_ref_pages.py

@@ -7,7 +7,8 @@ import mkdocs_gen_files
 
 nav = mkdocs_gen_files.Nav()
 
-for path in sorted(Path("src").rglob("*.py")): 
+for path in sorted(Path("src").rglob("*.py")):
+
     module_path = path.relative_to("src").with_suffix("")
 
     doc_path = path.relative_to("src").with_suffix(".md")
@@ -19,7 +20,7 @@ for path in sorted(Path("src").rglob("*.py")):
     if parts[-1] == "__init__":
         parts = parts[:-1]
         print("init parts:", parts)
-    if parts[-1] in ["notebooks", "settings", "calcat_interface", "restful_config", "__main__"]:
+    if parts[-1] in ["notebooks", "settings", "restful_config", "__main__"]:
         continue
 
     nav[parts] = doc_path.as_posix() 
@@ -27,9 +28,16 @@ for path in sorted(Path("src").rglob("*.py")):
     with mkdocs_gen_files.open(full_doc_path, "w") as fd:
 
         identifier = ".".join(parts)
-        print("::: " + identifier, file=fd)
+        if "calcat_interface" == full_doc_path.stem:
+            print(
+"""
+??? Note "This module help in skipping calibrationDBRemote"
+    ![Calibration DB Remote avoided](../xfel-calibrate_cli_process_no_caldbremote.png)
+""",
+                file=fd)
+        print("::: " + "src." + identifier, file=fd)
 
     mkdocs_gen_files.set_edit_path(full_doc_path, path)
 
-with mkdocs_gen_files.open("reference/SUMMARY.md", "w") as nav_file:
-    nav_file.writelines(nav.build_literate_nav()) 
+with mkdocs_gen_files.open(f"reference/summary.md", "w") as nav_file:
+    nav_file.writelines(nav.build_literate_nav())

docs/requirements.txt

-mkdocs>=1.4.0
-mkdocs-material~=9.0.0
-mkdocstrings[python]>=0.18
+mkdocs==1.4.2
+mkdocs-material==9.0.15
+mkdocstrings[python]==0.19
 mkdocs-glightbox
-mkdocs-section-index~=0.3.4
-mkdocs-literate-nav~=0.5.0
-mkdocs-redirects~=1.2.0
-mkdocs-jupyter~=0.24.0
-mkdocs-gen-files~=0.4.0
\ No newline at end of file
+mkdocs-section-index==0.3.5
+mkdocs-literate-nav==0.5.0
+mkdocs-redirects==1.2.0
+mkdocs-jupyter==0.24.0
+mkdocs-gen-files==0.4.0
\ No newline at end of file

mkdocs.yml

@@ -46,13 +46,6 @@ markdown_extensions:
   - tables
   - codehilite
 
-
-mkdocstrings.extension:
-      default_handler: python
-      handlers:
-        python:
-          selector: "python"
-          syntax: sphinx
 extra_css:
   - css/custom.css
 
@@ -61,20 +54,14 @@ plugins:
   - literate-nav:
       nav_file: SUMMARY.md
   - mkdocstrings:
-      default_handler: python
       handlers:
         python:
-          selector: "python"
-          syntax: sphinx
-      # default_handler: python
-      # handlers:
-      #   python:
-      #     selection:
-      #       docstring_style: sphinx
-      #       line_length: 81
-      #       merge_init_into_class: true
-      #       show_if_no_docstring: true
-      #       docstring_section_style: list
+          import:
+          - https://docs.python-requests.org/en/master/objects.inv
+          paths: [../src]
+          synatx: sphinx
+          docstring_section_style: list
+          docstring_style: sphinx
   - search
   - autorefs
   - mkdocs-jupyter:
@@ -102,9 +89,7 @@ nav:
       - How to write a notebook: development/how_to_write_xfel_calibrate_notebook_NBC.ipynb
       - Configuration: development/configuration.md
       - Advanced topics: development/advanced.md
-    - Code Reference:
-      - CALCAT Interface: code_reference/calcat_interface.md
-      - Code Reference: reference/
+    - Code Reference: reference/
     - Reference:
       - FAQ: references/faq.md
       - Changelog: references/changelog.md