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Commit 7e755d60 authored by Karim Ahmed's avatar Karim Ahmed
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update changelog to 3.11.5

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# Release Notes
## 3.11.5
- Update CalParrot==0.3 and EXtra-data==1.15.1 dependencies
- [DSSC][Dark][Correct] No longer restrict memory cells to a multiple of 100s and add lower deviation for memory cells parameter conditions.
- [Webservice] Catch errors on failure to launch dark processing
- Add script to update dark run status in myMdC
- [Epix100][Correct] Calcat error when no gain is retrieved
- [REMI] Disable trailing trigger by default
## 3.11.4
- [Jungfrau][Correct] Force fixed gain for JF data in burst mode
- [Jungfrau][Correct] Force replacement for gain value in Jungfrau correction
- [DSSC] Allow 900 memory cells for DSSC darks to workaround appearance of cell 810
- [Jungfrau][Dark] Reflect WRONG_GAIN_VALUE over a pixel in all gain for badpixels map
- [AGIPD][Dark] Add timings
- [Jungfrau][Correct] New A1256 JF Strixel
- [webservice] Add JUNGF and PEP 8 on the line
## 3.11.3
- [AGIPD][LPD][DARK] Show table for bad pixels bitmaps
- [AGIPD][CORRECT] Process all AGIPD trains if the PPU device is missing or if no trigger
- [AGIPD][DARK] Sort dark runs
- [AGIPD][DARK] Improvements for reading conditions by creating a new data class for multiple runs
- [AGIPD][FF] Fixing FF summary performance plots
- [Jungfrau] [Correct] Add thresholding for ROI projections
- [Jungfrau][Correct][Dark] Fix manual edit for operating conditions
- [Jungfrau][DARK] Validate and reorder dark runs before processing
- [EPIX][FF] ePixFF characterization
- [REMI] Add support for virtual trailing trigger
- Fix manually submitting the confirmation
- move some logs to DEBUG and extend the report sleep
- Expose --blc-stripes to update_config.py and fix old parameter names
## 3.11.2
- Operational release for SPB to support configurable rounding thresholds.
## 3.11.1
- [AGIPD][CORRECT] Use calcat_interface and remove precorrection notebook
- [EPIX100] Feat: Compliance with update to receiver device
- [REMI] Various fixes and improvements for quad DLDs
- [REMI] Fix missing re-allocation of trigger array with neither FEL nor PPL
- [Tests] Fix: Accept uppercase calibration type
- [Test] Find difference by default
- Clearer error when xfel-calibrate would run no jobs
- Detect cycle automatically in update_config script
- Fix link to CalCat
## 3.11.0
- [AGIPD][Correct] Handle selecting multiple trains per PPU trigger
- [AGIPD][Dark] Fix: Skip corrupted frame from dark processing
- [LPD1M] Automatically decide whether to inject & use memory cell order
- [LPD1M][Dark] Use EXtra-data to create darks from >1 sequence file
- [LPD1M][Correct] Use parameter names instead of IDs to find constants
- [LPD1M][Correct] Using CALCAT interface
- [LPD1M][Correct] Fix: Constant type conversion
- [LPD1M][Correct] Use the fragment file and remove the precorrection notebook
- [LPD-Mini] Rework cell order condition to match LPD-1M again
- [JUNGFRAU][pnCCD][ePix100] Feat: new method to display CCV metadata in reports
- [JUNGFRAU][CORRECT] Add fragment file and remove precorrection notebook
- [EPIX][DARK] Mark dead pixels as Bad Pixels
- [EPIX][CORR] Optimize histograms and plots
- [GH2][Correct] Move false warning and disable gain correction as printed.
- [GH2][Correct] Remove the precorrection notebook and add fragment
- [TIMEPIX] Add select parameters to update_config
- [TIMEPIX] Fix types of notebook arguments
- [xfel-calibrate] Fix: Break the line properly into latex when the next line starts with `_`
- [Webservice] Don't mark jobs as finished just because they disappear from `squeue` output
- [Webservice] Use status AW in myMdC if correction failed for some detectors in a run
- Add a pytest to run a dict of CALLAB test runs before releases
- Look up CCVs using parameter_name in place of parameter_id
- Replace `max-exfl016` and `max-exfl017` into `max-exfl-cal001` and `max-exfl-cal002`, respectively.
- Make metadata directory name match report filename
- Add reorder_axes function
## 3.10.3
- [LPD][Correct] Harden against empty sequencee sets with train-on-demand
......@@ -23,36 +106,34 @@
## 3.10.1
- [[JUNGFRAU][CORRECT] Using calcat interface](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/775)
- [[JUNGFRAU][CORRECT][DARK] Extend accepted detectors based on substrings of karabo_id](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/839)
- [[LPD Mini][CORRECT][DARK] Initial work on LPD Mini notebooks](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/813)
- [JUNGFRAU][CORRECT] Using calcat interface
- [JUNGFRAU][CORRECT][DARK] Extend accepted detectors based on substrings of karabo_id
- [[PNCCD][CORRECT] Avoid raising a CalCat error while retrieving metadata for missing gain constant from DB](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/837)
- [LPD Mini][CORRECT][DARK] Initial work on LPD Mini notebooks
- [PNCCD][CORRECT] Avoid raising a CalCat error while retrieving metadata for missing gain constant from DB
## 3.10.0
- [[ePix100][Correct] Avoid including histogram calculator with empty array](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/834)
- [[ePix100][Correct] Remove pre notebook](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/821)
- [[pnCCD][Correct] Using calcat interface](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/776)
- [[pnCCD][Correct] Record fragment file and remove pre correction notebook](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/828)
- [[ePix100][pnCCD][Correct] Display creation time for retrieved constants](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/835)
- [ePix100][Correct] Avoid including histogram calculator with empty array
- [ePix100][Correct] Remove pre notebook
- [[AGIPD][Correct] error out only if all sources are empty](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/817)
- [[AGIPD][Correct] exit notebook if no correction files are found for the selected sequence](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/818)
- [pnCCD][Correct] Using calcat interface
- [pnCCD][Correct] Record fragment file and remove pre correction notebook
- [ePix100][pnCCD][Correct] Display creation time for retrieved constants
- [[DSSC][DARK] Group all slow data to the same aggregator](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/819)
- [AGIPD][Correct] error out only if all sources are empty
- [AGIPD][Correct] exit notebook if no correction files are found for the selected sequence
- [[JUNGFRAU][Correct] Use DataCollection.from_paths for reading JF CORR files for plots](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/812)
- [Support for saving metadata fragments & merging into calibration_metadata.yml](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/781)
- [DSSC][DARK] Group all slow data to the same aggregator
- [[REMI] Save pulse amplitudes during discrimination](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/822)
- [[REMI] Make plots robust against no edges or no hits in data](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/827)
- [JUNGFRAU][Correct] Use DataCollection.from_paths for reading JF CORR files for plots
- Support for saving metadata fragments & merging into calibration_metadata.yml
- [[Webservice] Add script to check run in webservice DB](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/831)
- [[Webservice] Fix database lock timeouts](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/832)
- [REMI] Save pulse amplitudes during discrimination
- [REMI] Make plots robust against no edges or no hits in data
- [Webservice] Add script to check run in webservice DB
- [Webservice] Fix database lock timeouts
## 3.9.2
......@@ -66,25 +147,24 @@
## 3.9.0
- [[Gotthard2][CORRECT]CALCAT interface.](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/778)
- [[ePix100][CORRECT]CALCAT interface.](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/777)
- [[pnCCD][CORRECT]Use `DataFile` to store aligned corrected data.](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/788)
- [[Gotthard2][CORRECT]Use `DataFile` to store aligned corrected data.](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/804)
- [[ePix100][CORRECT]Use `DataFile` to store aligned corrected data.](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/804)
- [Gotthard2][CORRECT]CALCAT interface.
- [ePix100][CORRECT]CALCAT interface.
- [pnCCD][CORRECT]Use `DataFile` to store aligned corrected data.
- [Gotthard2][CORRECT]Use `DataFile` to store aligned corrected data.
- [ePix100][CORRECT]Use `DataFile` to store aligned corrected data.
- [AGIPD][SlopesFF][CORRECT]Add the deviation for all possible memory cells and enable correction using
these FF constants with more memory cells.
- https://git.xfel.eu/calibration/pycalibration/-/merge_requests/806
- https://git.xfel.eu/calibration/pycalibration/-/merge_requests/613
- [[AGIPD][CORRECT]Fix checking ccv_variant condition for AGIPD.](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/803)
- [AGIPD][CORRECT]Fix checking ccv_variant condition for AGIPD.
- [[DSSC][Dark]Remove unused instrument parameter from DSSC dark notebook](
https://git.xfel.eu/calibration/pycalibration/-/merge_requests/808)
- [DSSC][Dark]Remove unused instrument parameter from DSSC dark notebook
- [Update `nbparameterise` to 0.6.](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/805)
- [Update `EXtra-redu` to version 0.0.7](https://git.xfel.eu/calibration/pycalibration/-/merge_requests/802)
- Update `nbparameterise` to 0.6.
- Update `EXtra-redu` to version 0.0.7
## 3.8.1
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