Commits · 2e05cca25a32f1f74be62afbe9f8178ce3ad3ee3 · calibration / pycalibration

Dec 20, 2021

Merge branch 'master' into 'feat/read_with_EXtra_data_Jungfrau' · 2e05cca2

Thomas Kluyver authored 3 years ago

# Conflicts:
#   notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb
#   notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb

2e05cca2

Dec 13, 2021
- Merge branch 'fix/xfel-calibrate-args-rework' into 'master' · 85605a4b
  Philipp Schmidt authored 3 years ago
  
  Fix missing switch from key to attribute access in xfel-calibrate args after rework See merge request detectors/pycalibration!608
  85605a4b
- Fix missing switch from key to attribute access in xfel-calibrate args after rework · 833921d1
  Philipp Schmidt authored 3 years ago
  
  833921d1
Dec 10, 2021

Merge branch 'feat/agipd_lit_frame_finder' into 'master' · 930d8df1

Egor Sobolev authored 3 years ago

Add selection of lit frames using AgipdLitFrameFinder device

See merge request detectors/pycalibration!603

930d8df1

Dec 07, 2021
- Merge branch 'fix/remi-old-files' into 'master' · 8e18be82
  Philipp Schmidt authored 3 years ago
  
  [REMI] Add compatibility with old DAQ files See merge request detectors/pycalibration!607
  8e18be82
- Merge branch 'rm-auto-reservation' into 'master' · 0e8bfd73
  Thomas Kluyver authored 3 years ago
  
  Remove unused code to automatically select Slurm reservation See merge request detectors/pycalibration!590
  0e8bfd73
Dec 06, 2021
- Don't pass --priority from webservice to xfel-calibrate · 47db95d9
  Thomas Kluyver authored 3 years ago
  
  47db95d9
- Remove some unused settings · 4e93002d
  Thomas Kluyver authored 3 years ago
  
  4e93002d
- Use ndarray.nonzero() rather than np.where() in REMI reconstruct · db81d25f
  Philipp Schmidt authored 3 years ago
  
  db81d25f
- Merge branch 'fix/process_sequences_with_highest_trainIds' into 'master' · aee1ae3e
  Karim Ahmed authored 3 years ago
  
  [AGIPD][DARK] FIX: Make sure to process darks out of sequence file with the highest trainIds See merge request detectors/pycalibration!601
  aee1ae3e
- Make plots in REMI reconstruct robust against bad data · a7d0b67c
  Philipp Schmidt authored 3 years ago
  
  a7d0b67c
- Fix edge trigger and add compatibility for old DAQ files in REMI reconstruct notebook · f4b844e7
  Philipp Schmidt authored 3 years ago
  
  f4b844e7
Dec 02, 2021
- apply suggested refactors · 4fae716d
  Karim Ahmed authored 3 years ago
  
  4fae716d
Dec 01, 2021
- Merge branch 'fix/report_partition' into 'master' · f1b4a261
  Karim Ahmed authored 3 years ago
  
  Fix / report partition same as action slurm partition See merge request detectors/pycalibration!606
  f1b4a261
- Remove unused code to automatically select Slurm reservation · 89971d05
  Thomas Kluyver authored 3 years ago
  
  89971d05
Nov 30, 2021
- Return back the validation of max_pulses · 6bb3a22c
  Egor Sobolev authored 3 years ago
  
  Co-authored-by: Karim Ahmed <karim.ahmed@xfel.eu>
  6bb3a22c
- Apply suggestions of reviewers · 0e91ff85
  Egor Sobolev authored 3 years ago
  
  Co-authored-by: Thomas Kluyver <thomas.kluyver@xfel.eu> Co-authored-by: Karim Ahmed <karim.ahmed@xfel.eu>
  0e91ff85
Nov 25, 2021
- repalce if/else with or · ebd57c4f
  Thomas Kluyver authored 3 years ago and Karim Ahmed committed 3 years ago
  
  ebd57c4f
- avoid using dedicated partition for reports · cc4eec7e
  Karim Ahmed authored 3 years ago
  
  cc4eec7e
- Fix / report_slurm_partition to switch requirements for xcal and users · abcd9441
  Karim Ahmed authored 3 years ago
  
  abcd9441
Nov 16, 2021
- Fix minor issues and code style · 5803b7e6
  Egor Sobolev authored 3 years ago
  
  5803b7e6
- Add selection of lit frames using AgipdLitFrameFinder device · 572b96de
  Egor Sobolev authored 3 years ago
  
  572b96de
Nov 15, 2021
- Merge branch 'refactor/calibrate-argv' into 'master' · 3b86f664
  Thomas Kluyver authored 3 years ago
  
  Refactor parsing arguments and loading main notebook Closes #51 See merge request detectors/pycalibration!575
  3b86f664
- Allow for notebook with no markdown cells · 64109856
  Thomas Kluyver authored 3 years ago
  
  64109856
Nov 12, 2021
- Merge branch 'req-h5py-3.5' into 'master' · 6e2e3ed4
  Thomas Kluyver authored 3 years ago
  
  Update h5py to version 3.5.0 See merge request detectors/pycalibration!602
  6e2e3ed4
- Use attribute access for args object · 53c3bace
  Thomas Kluyver authored 3 years ago
  
  53c3bace
- Require Python 3.8 or above · e10f8c9c
  Thomas Kluyver authored 3 years ago
  
  e10f8c9c
- This would require Python 3.7 or above · 47d0c106
  Thomas Kluyver authored 3 years ago
  
  47d0c106
- Correct numbers of blank lines · 72968d6a
  Thomas Kluyver authored 3 years ago
  
  72968d6a
- isort imports · 69a87b0a
  Thomas Kluyver authored 3 years ago
  
  69a87b0a
- No longer need to modify global notebooks dictionary · e8e5df10
  Thomas Kluyver authored 3 years ago
  
  e8e5df10
- Improve warnings/errors around concurrency parameter · 7cfe3c34
  Thomas Kluyver authored 3 years ago
  
  7cfe3c34
- Refactor parsing command line args & loading main notebook · d784e473
  Thomas Kluyver authored 3 years ago
  
  d784e473
- Test xfel_calibrate without needing to monkeypatch sys.argv · be0b01c4
  Thomas Kluyver authored 3 years ago
  
  be0b01c4
- Accept argv as input to various functions · 536bfed6
  Thomas Kluyver authored 3 years ago
  
  536bfed6
- Extract functions relating to notebook arguments to a new module · 00a0ad26
  Thomas Kluyver authored 3 years ago
  
  00a0ad26
Nov 10, 2021
- [AGIPD][DARK] FIX: Make sure to process darks out of sequence file with the highest trainIds · 48d28055
  Karim Ahmed authored 3 years ago
  
  48d28055
- Merge branch 'feat/non-reproducible-warning' into 'master' · d93e9fce
  Philipp Schmidt authored 3 years ago
  
  Add warning if xfel-calibrate may not be reproducible See merge request detectors/pycalibration!588
  d93e9fce
- Clarify reproducibility warnings and replace confirmation prompt by early exit · bea42570
  Philipp Schmidt authored 3 years ago
  
  bea42570
Nov 09, 2021
- Merge branch 'hotfix/report-slurm-partition' into 'master' · d25c1ddb
  Philipp Schmidt authored 3 years ago
  
  Queue finalize job in upex-middle rather than exfel See merge request detectors/pycalibration!600
  d25c1ddb