Commits · e93b2f901547ac528904034ea3d5738f9481dbd3 · calibration / pycalibration

Mar 01, 2022

[AGIPD][CORRECT][DARK] Extra-data with AGIPD · e93b2f90

Karim Ahmed authored 3 years ago

1- Update key names h5path, h5path_ctrl, receiver_id, ...
2- Start using extra-data to read files.
3- Introduce AGIPDCtrl to read slow data.

e93b2f90

Feb 24, 2022
- remove undefined fastccd dark `db_module` parameter · 0fe32405
  Karim Ahmed authored 3 years ago
  
  0fe32405
- JF correct json format error, and wierd fix only if calibration_metadata.yml exists · 134870a3
  Karim Ahmed authored 3 years ago
  
  134870a3
Feb 23, 2022
- [Jungfrau][DARK][CORRECT] Feat/fixed gain jungfrau · 35a340f0
  Karim Ahmed authored 3 years ago
  
  35a340f0
Feb 22, 2022
- FIX + Doc / Build_readthedocs_documentation · 875bd8e5
  Karim Ahmed authored 3 years ago
  
  875bd8e5
Feb 16, 2022
- Process darks from 500 trains only · afff5ad3
  Karim Ahmed authored 3 years ago
  
  afff5ad3
Feb 14, 2022
- process all trains, correct offset dtype, and save raw image like before · 17a780c5
  Karim Ahmed authored 3 years ago
  
  17a780c5
Feb 12, 2022
- fix importing get_gain_mode · cb9fee67
  Karim Ahmed authored 3 years ago
  
  cb9fee67
- remove set_parameters_manually · 65f23b21
  Karim Ahmed authored 3 years ago
  
  65f23b21
Jan 26, 2022
- auto -> adaptive in help message · a397fc30
  Thomas Kluyver authored 3 years ago
  
  a397fc30
- auto -> adaptive in help message · 2bc863b7
  Thomas Kluyver authored 3 years ago
  
  2bc863b7
- -1 sequences by default · 8c4a8dc5
  Karim Ahmed authored 3 years ago
  
  8c4a8dc5
Jan 20, 2022
- Add parameter for gain_mode in AGIPD correction · 18ca0052
  Thomas Kluyver authored 3 years ago
  
  18ca0052
- plot first cell in burst and single cell · 2f81a439
  Karim Ahmed authored 3 years ago
  
  2f81a439
- [EPIX100] Reading data using EXtra-data for both Correct and Dark notebooks. · 183003a7
  Karim Ahmed authored 3 years ago
  
  Using pasha and removing ipyparallel for parallelization and avoiding the use of pyDetlib for noise and offset calculation
  183003a7
Jan 18, 2022
- Fix: [AGIPD][DARK] index out of range in case of running for one module · 9fd52cf5
  Karim Ahmed authored 3 years ago
  
  9fd52cf5
Jan 17, 2022
- [FIX][JUNGFRAU][CORRECT] Index first cell for single cell corrected data · b6e7d2b9
  Karim Ahmed authored 3 years ago
  
  b6e7d2b9
Dec 06, 2021
- Use ndarray.nonzero() rather than np.where() in REMI reconstruct · db81d25f
  Philipp Schmidt authored 3 years ago
  
  db81d25f
- Make plots in REMI reconstruct robust against bad data · a7d0b67c
  Philipp Schmidt authored 3 years ago
  
  a7d0b67c
- Fix edge trigger and add compatibility for old DAQ files in REMI reconstruct notebook · f4b844e7
  Philipp Schmidt authored 3 years ago
  
  f4b844e7
Dec 02, 2021
- apply suggested refactors · 4fae716d
  Karim Ahmed authored 3 years ago
  
  4fae716d
Nov 30, 2021

Apply suggestions of reviewers · 0e91ff85

Egor Sobolev authored 3 years ago


Co-authored-by: Thomas Kluyver <thomas.kluyver@xfel.eu>
Co-authored-by: Karim Ahmed <karim.ahmed@xfel.eu>

0e91ff85

Nov 22, 2021
- Update pnccd correct based on MR comments · 2b99c4d1
  Karim Ahmed authored 3 years ago
  
  2b99c4d1
Nov 16, 2021
- Add selection of lit frames using AgipdLitFrameFinder device · 572b96de
  Egor Sobolev authored 3 years ago
  
  572b96de
Nov 10, 2021
- [AGIPD][DARK] FIX: Make sure to process darks out of sequence file with the highest trainIds · 48d28055
  Karim Ahmed authored 3 years ago
  
  48d28055
- remove unneeded parameters and alg. · b2341f5d
  Karim Ahmed authored 3 years ago
  
  b2341f5d
Nov 09, 2021
- remove prettyPlotting and use get_run_value · bba8b049
  Karim Ahmed authored 3 years ago
  
  bba8b049
Nov 08, 2021
- [AGIPD][CORRECT] if only offset chosen, there wont be xray_corr key · ef78f34d
  Karim Ahmed authored 3 years ago
  
  ef78f34d
- remove ctrl_src · b3129aed
  Karim Ahmed authored 3 years ago
  
  b3129aed
- some refactors · 5cff6ce4
  Karim Ahmed authored 3 years ago
  
  5cff6ce4
Nov 03, 2021
- separate correction processes · 6c966256
  Karim Ahmed authored 3 years ago
  
  6c966256
Nov 01, 2021
- [AGIPD][HED][PRE-CORRECT][PC] get_acq_rate from slowpaths · 522997c2
  Karim Ahmed authored 3 years ago
  
  522997c2
Oct 28, 2021
- refactors and remove pydetlib from dark · f79d3463
  Karim Ahmed authored 3 years ago
  
  f79d3463
Oct 20, 2021
- have db_module an empty list instead of a string · 85138467
  Karim Ahmed authored 3 years ago
  
  85138467
- Fix formatting of filename in Jungfrau dark notebook · 8269718f
  Cyril Danilevski authored 3 years ago
  
  8269718f
- set absolute_gain to false if relative gain was not retrieved · fc302656
  Karim Ahmed authored 3 years ago
  
  fc302656
Oct 19, 2021
- Add skip-plots option to AGIPD correction notebook · c573a347
  Philipp Schmidt authored 3 years ago
  
  c573a347
- load all data array instead of each train · 2e8dee22
  Karim Ahmed authored 3 years ago
  
  2e8dee22
Oct 18, 2021
- Fix no longer needed parameters, figure clears and markup wording · b192e53f
  Philipp Schmidt authored 3 years ago
  
  b192e53f
- use map_seq_files instead of map_modules_from_folder · 7d05d657
  Karim Ahmed authored 3 years ago
  
  7d05d657