Mikhail Karnevskiy
--- a/xfel_calibrate/calibrate.py
+++ b/xfel_calibrate/calibrate.py
        cell.source += "\n%config InlineBackend.figure_formats = ['svg']\n"


+def create_finalize_script(fmt_args, temp_path, job_list):
+    """
+    Create a finalize script to produce output report
+    :param fmt_args: Dictionary of fmt arguments
+    :param temp_path: Path to temopary folder to run slurm job
+    :param job_list: List of slurm jobs
+    """
+    tmpl = Template('''
+                    #!/bin/tcsh
+                    source /etc/profile.d/modules.sh
+                    module load texlive
+                    echo 'Running finalize script'
+                    python3 -c "from cal_tools.tools import finalize; 
--- a/xfel_calibrate/calibrate.py
+++ b/xfel_calibrate/calibrate.py
+                    module load texlive
+                    echo 'Running finalize script'
+                    python3 -c "from cal_tools.tools import finalize; 
+                    finalize({{joblist}}, $1, '{{run_path}}', '{{out_path}}',
+                    '{{project}}', '{{calibration}}', '{{author}}',
+                    '{{version}}', '{{report_to}}', '{{in_folder}}' )"
+                    
+                    ''')
+
+    fmt_args['joblist'] = job_list
+    f_name = "{}/finalize.sh".format(temp_path)
+    with open(f_name, "w") as finfile:
+        finfile.write(textwrap.dedent(tmpl.render(**fmt_args)))
+
+    all_stats = stat.S_IXUSR | stat.S_IWUSR | stat.S_IRUSR | stat.S_IRGRP | stat.S_IROTH
+    os.chmod(f_name, all_stats)
--- a/xfel_calibrate/calibrate.py
+++ b/xfel_calibrate/calibrate.py
+    tmpl = Template('''
+                    #!/bin/tcsh
+                    source /etc/profile.d/modules.sh
+                    module load texlive
+                    echo 'Running finalize script'
+                    python3 -c "from cal_tools.tools import finalize; 
+                    finalize({{joblist}}, $1, '{{run_path}}', '{{out_path}}',
+                    '{{project}}', '{{calibration}}', '{{author}}',
+                    '{{version}}', '{{report_to}}', '{{in_folder}}' )"
+                    
+                    ''')
+
+    fmt_args['joblist'] = job_list
+    f_name = "{}/finalize.sh".format(temp_path)
+    with open(f_name, "w") as finfile:
+        finfile.write(textwrap.dedent(tmpl.render(**fmt_args)))