[AGIPD] [Reports] Add mini half figures
Description
This adds the geometry figure that are used in reports to highlight which module is a given chapter of a report about.
This is still a WIP, as we need a new release of extra_geom.
How Has This Been Tested?
This currently has been tested with a notebook calling directly show_processed_modules:
from cal_tools.plotting import show_processed_modules
show_processed_modules(dinstance='AGIPD500K', constants={}, mnames=['Q1M1'], mode='processed') # no noise
show_processed_modules(dinstance='AGIPD500K', mnames['Q2M1'], mode='position')I still want to generate a report from darks processing, which I'll attach when available.
Relevant Documents (optional)
In processed mode (no Noise in constants):
In position mode:
Types of changes
- New feature (non-breaking change which adds functionality)
Reviewers
Merge request reports
Activity
added 1 commit
- 5ae7754c - [AGIPD][Darks] Reinstate overall module summary fro mini-half
added 1 commit
- a17df915 - [AGIPD][Darks] Reinstate overall module summary for mini-half
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Here's a report generated from HED darks: agipdcharacterizedarkimages.pdf
It was generated using this branch, extra_geom on master, and these arguments:
xfel-calibrate AGIPD DARK \ --slurm-mem 750 \ --slurm-name darks_mini_half \ --report-to /gpfs/exfel/data/scratch/danilevc/out/mini_half_test \ --receiver-id {}CH0 \ --karabo-id-control HED_EXP_AGIPD500K2G \ --karabo-da-control AGIPD500K2G00 \ --h5path-ctrl /CONTROL/{}/MDL/FPGA_COMP \ --in-folder /gpfs/exfel/exp/HED/202031/p900174/raw/ \ --out-folder /gpfs/exfel/data/scratch/danilevc/out/mini_half_test/runs_r0010_r0011_r0012 \ --karabo-id HED_DET_AGIPD500K2G \ --run-high 10 \ --run-med 11 \ --run-low 12 \ --modules 0,1,2,3,4,5,6,7 \ 281 # Create a dict that contains the range of tiles, in the figure, 282 # that belong to a module. 283 ranges = dict() 284 count = 0 285 for quadrant in range(1, 3): 286 for module in range(1, 5): 287 ranges[f'Q{quadrant}M{module}'] = [count, count + 8] 288 count += 8 289 290 geom = AGIPD_500K2GGeometry.from_origin() 291 ax = geom.inspect() 292 293 ax.set_title('') # Cannot remove title 294 ax.set_axis_off() 295 ax.get_legend().set_visible(False) 296 ax.figure.set_dpi(100) -
I decided to keep the poorly contrasting colours for now.
We plan to make use of extra_geom for other detectors as well. As such, we'll make a saner colour scheme when updating all figures :)Edited by Cyril Danilevski added 1 commit
- 32785a46 - Apply suggestion to cal_tools/cal_tools/plotting.py
mentioned in commit 6eb9b438
