[MAPPING][DARK][INJECT] PT2 Update injecting functions and Dark notebooks

Summary:

Previously we were using the information about the physical detector units (PDUs) to inject the new generated calibration constant versions (CCVs). With the new detector mapping, PDU will still be used from a different source than the stored device metadata from cal_db_interactive.

db_module is the used term for Physical Detector Unit in pyCalibration. db_module will be retrieved if it was not given through myMDC or calibration_configurations in the nb's 1st Cell.

Then it will be used in sending constants to the database and storing them locally.

1. I have updated the main pyCalibration wrapper functions @tools.py that are used to inject CCVs
2. I have also updated the main dark notebooks for all 8 detectors (AGIPD, LPD, DSSC, Epix10K, Epix100, pnCCD, JungFrau, and FastCCD) and AGIPD's PC 3- Added report_path as a new sent metadata.

This merge request is connected to:

1. https://git.xfel.eu/gitlab/detectors/cal_db_interactive/merge_requests/58
2. https://git.xfel.eu/gitlab/detectors/cal_db_interactive/merge_requests/59
3. https://git.xfel.eu/gitlab/detectors/cal_db_interactive/merge_requests/60
4. https://git.xfel.eu/gitlab/detectors/pycalibration/merge_requests/413

Tests:

• More tests are in progress

Reviewers:

@danilevc @hammerd @roscar

Note: This MR will be rebased on multiple MR's waiting for review.

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changed title from [MAPPING][DARK][INJECT] Feat/v2 mapping pt2 inject and darks to [MAPPING][DARK][INJECT] PT2 Update injecting functions and Dark notebooks

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Like before I'll look through the notebooks later

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DSSC Dark notebook is missing

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• 1aa89037 - fix pnccd conflicts, agipd error and remove unneeded Optional

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• bda046f3 - Fix unset variables, fix mutable keyword argument
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• 507adb34 - Merge branch 'feat/202' into 'master'
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• 80584993 - part1 MR suggestions

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• e8417deb - update get_pdu_from_detectors based on MR suggestion

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• e8417deb - update get_pdu_from_detectors based on MR suggestion

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• 67afb068 - fixes, updating pnccd gain and updating the requirements

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• 05157353 - fix/3.0.0-test04 tests

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• 05157353...c332e608 - 8 commits from branch master
• 1b5a4664 - resolve conflicts

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• 05157353...1b5a4664 - 9 commits from branch master

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Offline LGTM from @danilevc

Thank you a lot @danilevc and @hammerd and @roscar for the pain of going through this MR

mentioned in commit d5898d20

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