[DARKS] Saving detector modules mapping in calibrationMetadata YAML file to use for summary modular notebook

The summary notebook for modular detectors was still using old mapping code to get the physical name from the hardcoded SW in cal_db_interactive.

This MR updates the notebook along with all three dark notebooks for AGIPD, LPD, and DSSC.

Description

As we have CalibrationMetadata YAML by default. The dark notebooks create a module_mapping.yml for each module.

Then the overall notebook will read the mapping and collect them in the CalibrationMetadata YAML file as below and use them to open local constants and create plotting comparisons between new and previous versions.

"modules_mapping": {
    "Q1M1": "AGIPD_....._M315, 
     .....
}

There are more improvements needed (not saving pre-existing constants locally). But I have reduced changes to the bare minimum for releasing the fix soon.

How Has This Been Tested?

AGIPD:

xfel-calibrate agipd DARK \
--cal-db-interface tcp://max-exfl016:8015#8044 \
--concurrency-par karabo_da \
--karabo-da AGIPD00 AGIPD01 AGIPD02 AGIPD03 AGIPD04 AGIPD05 \
AGIPD06 AGIPD07 AGIPD08 AGIPD09 AGIPD10 \
AGIPD11 AGIPD12 AGIPD13 AGIPD14 AGIPD15 \
--receiver-id {}CH0 \
--karabo-id-control SPB_IRU_AGIPD1M1 \
--karabo-da-control AGIPD1MCTRL00 \
--h5path-ctrl /CONTROL/{}/MDL/FPGA_COMP \
--mem-cells 0 --thresholds-offset-hard 0 0 \
--in-folder /gpfs/exfel/exp/SPB/202130/p900188/raw \
--out-folder /gpfs/exfel/data/scratch/ahmedk/test/fixed_gain/SPB_summary_fix2 \
--karabo-id SPB_DET_AGIPD1M-1 \
--operation-mode ADAPTIVE_GAIN \
--run-high 302 --run-med 303 --run-low 304\

LPD and DSSC:

Already written configs in the first cell were used to test with xfel-calibrate command.

Relevant Documents (optional)

AGIPDCharacterizeDarkImages.pdf

DSSCCharacterizeDarkImages.pdf

LPDOffset_NoiseandDeadPixelsCharacterization.pdf

Types of changes

• Bugfix (non-breaking change which fixes an issue)

Checklist:

• My code follows the code style of this project.

Reviewers

@calibration