[AGIPD][CORRECT][DARK] Extra-data with AGIPD

Reading fast and slow data from xfel h5 files using EXtra-data for AGIPD.

Description

Related to: and . AGIPD notebooks are updated with EXtra-data.

Using H5Files for Correction (Keeping the over sequences parallelization) and RunDirectory for Darks.

Updating agipdlib.py

1- A new class AGIPDConditions to read and validate similarity of all AGIPD conditions from a list of DataCollection of Fast and Slow data.

How Has This Been Tested?

Relevant Documents (optional)

DARK:

AGIPD_EXT_DARK_ONE_SEQ.pdf

AGIPD_MASTER_DARK_ONE_SEQ.pdf

CORRECT:

OFFSET + COMMON-MODE:

AGIPD-COMMON_MODE_Ext.pdf

AGIPD-COMMON_MODE_Master.pdf.pdf

Selecting pulses to correct [0, 50, 2]:

common-mode TRUE:

MASTER_CORR_PULSES_COMMON_MODE.pdf

EXT_CORR_PULSES_COMMON_MODE.pdf

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)

Checklist:

• update calibration_configurations with the new configs names

Reviewers

@kluyvert @schmidtp

notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb

     run_dc=image_dc.union(H5File(control_fn)),
     image_src=instrument_src_mod,
     ctrl_src=ctrl_src,
+    raise_error=False,  # to be able to process very old data without gain_setting value
 )