This implements lit-pixel counter.
This depends on !982 (merged)
This implements the lit-pixel counter, which computes the number of lit-pixels per image & module. This metric is needed for SPI hit-finder algorithm.
This records the computed metric in files together with corrected data.
The algorithm is implemented as analysis addon.
It was tested by processing run 56 in proposal 7076
% extra-data-validate .
Checking run directory: .
Progress: 208/208 [##################################################]
0 problems
No problems foundCORR-R0056-AGIPD15-S00012.h5
├INDEX
│ ├SPB_DET_AGIPD1M-1
│ │ ├CORR
│ │ │ └15CH0:output
│ │ │ └image
│ │ │ ├count [uint64: 10]
│ │ │ └first [uint64: 10]
│ │ ├DET
│ │ │ └15CH0:xtdf -> /INDEX/SPB_DET_AGIPD1M-1/CORR/15CH0:output
│ │ └LITPX
│ │ └15CH0:output
│ │ └litpx
│ │ ├count [uint64: 10]
│ │ └first [uint64: 10]
│ ├flag [int32: 10]
│ ├origin [int32: 10]
│ ├timestamp [uint64: 10]
│ └trainId [uint64: 10]
├INSTRUMENT
│ └SPB_DET_AGIPD1M-1
│ ├CORR
│ │ └15CH0:output
│ │ └image
│ │ ├blShift [float32: 3510]
│ │ ├cellId [uint16: 3510]
│ │ ├data [int16: 3510 × 512 × 128]
│ │ ├gain [uint8: 3510 × 512 × 128]
│ │ ├mask [uint32: 3510 × 512 × 128]
│ │ ├pulseId [uint64: 3510]
│ │ └trainId [uint64: 3510]
│ ├DET
│ │ └15CH0:xtdf -> /INSTRUMENT/SPB_DET_AGIPD1M-1/CORR/15CH0:output
│ └LITPX
│ └15CH0:output
│ └litpx
│ ├cellId [uint16: 3510]
│ ├litPixels [int64: 3510]
│ ├pulseId [uint64: 3510]
│ ├totalIntensity [int64: 3510]
│ ├trainId [uint64: 3510]
│ └unmaskedPixels [int64: 3510]
└METADATA
├creationDate [ASCII string: 1]
├daqLibrary [ASCII string: 1]
├dataFormatVersion [ASCII string: 1]
├dataSources
│ ├dataSourceId [ASCII string: 3]
│ ├deviceId [ASCII string: 3]
│ └root [ASCII string: 3]
├karaboFramework [ASCII string: 1]
├proposalNumber [uint32: 1]
├runNumber [uint32: 1]
├sequenceNumber [uint32: 1]
└updateDate [ASCII string: 1]CORR-R0056-AGIPD15-S00012.h5/METADATA/dataSources/dataSourceId
dtype: ASCII string
shape: 3
maxshape: 3
layout: Contiguous
sample data:
[b'INSTRUMENT/SPB_DET_AGIPD1M-1/CORR/15CH0:output/image' b'INSTRUMENT/SPB_DET_AGIPD1M-1/DET/15CH0:xtdf/image'
b'INSTRUMENT/SPB_DET_AGIPD1M-1/LITPX/15CH0:output/litpx']
0 attributes: