Merge branch 'testing'

__init__.py → cfelpyutils/__init__.py

@@ -12,23 +12,21 @@
 #
 #    You should have received a copy of the GNU General Public License
 #    along with cfelpyutils.  If not, see <http://www.gnu.org/licenses/>.
-
-
 """
 Utilities for CFEL software projects.
 
-This module provides utilities (functions, classes, etc.) used by many CFEL projects.
-
-It contains the following submodules (non of which are automatically imported):
-
-cfelfabio: utilities based on the fabio python module (a module that allows
-python to work with several file format used in x-ray imaging).
-
-cfelgeom: utilities for processing CrystFEL-style geometry files.
+This package contains the implementation of several utiliy functions
+and classes used by many projects developed at the Center For Free
+Electron Laser Science (CFEL) in Hamburg.
+(`Link CFEL: https://www.cfel.de`)
 
-cfelhdf5: utilities for processing HDF5 files (based on the h5py python module).
+The 'crystfel_utils' submodule contains python implementations of
+some functions from the CrystFEL software package.
+(`Link CrystFEL http://www.desy.de/~twhite/crystfel/`)
 
-cfeloptarg: utilities to parse command line arguments and parameter files.
+The 'geometry_utils' submodule contains the implementation of functions
+used to manipulate detector geometry information.
 
-cfelpsana: utilities that expand the functionality of the psana python module.
+The 'parameter utils' submodule contains the implementation of
+functions used to manipulate detector geometry information.
 """

doc/Makefile

-# Makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line.
-SPHINXOPTS    =
-SPHINXBUILD   = sphinx-build
-PAPER         =
-BUILDDIR      = build
-
-# User-friendly check for sphinx-build
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-.PHONY: help
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-	@echo "  man        to make manual pages"
-	@echo "  texinfo    to make Texinfo files"
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-	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
-	@echo "  coverage   to run coverage check of the documentation (if enabled)"
-
-.PHONY: clean
-clean:
-	rm -rf $(BUILDDIR)/*
-
-.PHONY: html
-html:
-	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
-	@echo
-	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
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-.PHONY: dirhtml
-dirhtml:
-	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
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-	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
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-.PHONY: singlehtml
-singlehtml:
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-.PHONY: pickle
-pickle:
-	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
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-json:
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-.PHONY: htmlhelp
-htmlhelp:
-	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
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-	@echo "Build finished; now you can run HTML Help Workshop with the" \
-	      ".hhp project file in $(BUILDDIR)/htmlhelp."
-
-.PHONY: qthelp
-qthelp:
-	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
-	@echo
-	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
-	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
-	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/cfelpyutils.qhcp"
-	@echo "To view the help file:"
-	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/cfelpyutils.qhc"
-
-.PHONY: applehelp
-applehelp:
-	$(SPHINXBUILD) -b applehelp $(ALLSPHINXOPTS) $(BUILDDIR)/applehelp
-	@echo
-	@echo "Build finished. The help book is in $(BUILDDIR)/applehelp."
-	@echo "N.B. You won't be able to view it unless you put it in" \
-	      "~/Library/Documentation/Help or install it in your application" \
-	      "bundle."
-
-.PHONY: devhelp
-devhelp:
-	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
-	@echo
-	@echo "Build finished."
-	@echo "To view the help file:"
-	@echo "# mkdir -p $$HOME/.local/share/devhelp/cfelpyutils"
-	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/cfelpyutils"
-	@echo "# devhelp"
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-.PHONY: epub
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doc/build/html/.buildinfo

-# Sphinx build info version 1
-# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 79b05e5dc01502d78f8d7f79787fd7c7
-tags: 645f666f9bcd5a90fca523b33c5a78b7

doc/build/html/_sources/cfelpyutils.crystfel_utils.rst.txt

-cfelpyutils\.crystfel\_utils module
-===================================
-
-.. automodule:: cfelpyutils.crystfel_utils
-    :members:
-    :undoc-members:
-    :show-inheritance:

doc/build/html/_sources/cfelpyutils.geometry_utils.rst.txt

-cfelpyutils\.geometry\_utils module
-===================================
-
-.. automodule:: cfelpyutils.geometry_utils
-    :members:
-    :undoc-members:
-    :show-inheritance:

doc/build/html/_sources/cfelpyutils.parameter_utils.rst.txt

-cfelpyutils\.parameter\_utils module
-====================================
-
-.. automodule:: cfelpyutils.parameter_utils
-    :members:
-    :undoc-members:
-    :show-inheritance:

doc/build/html/_sources/cfelpyutils.rst.txt

-cfelpyutils package
-===================
-
-Submodules
-----------
-
-.. toctree::
-
-   cfelpyutils.crystfel_utils
-   cfelpyutils.geometry_utils
-   cfelpyutils.parameter_utils
-
-Module contents
----------------
-
-.. automodule:: cfelpyutils
-    :members:
-    :undoc-members:
-    :show-inheritance:

doc/build/html/_sources/index.rst.txt

-.. cfelpyutils documentation master file, created by
-   sphinx-quickstart on Wed Mar 30 11:47:49 2016.
-   You can adapt this file completely to your liking, but it should at least
-   contain the root `toctree` directive.
-
-Welcome to cfelpyutils's documentation!
-=======================================
-
-Contents:
-
-.. toctree::
-   :maxdepth: 2
-
-
-
-Indices and tables
-==================
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`
-

doc/build/html/_sources/modules.rst.txt

-cfelpyutils
-===========
-
-.. toctree::
-   :maxdepth: 4
-
-   cfelpyutils