typo

python_package/src/onlinemid/roi/roi.py

@@ -15,9 +15,10 @@ def make_onlineroi_from_roi_array(roi_array):
 
 
     def compress_roi_array(roi_array):
+        
         compressed_data = NpVec(dtype=np.uint64)
         roi_ravel = roi_array.reshape(-1)
-        
+        print("compressing", roi_ravel)
         index = 0
         while index < roi_array.size:
             length = 0
@@ -29,30 +30,33 @@ def make_onlineroi_from_roi_array(roi_array):
                 while roi_ravel[index+length] is True:
                     length +=1         
 
+                print("(index, lnegth)", index, length)
                 compressed_data.add(np.array([index, length], dtype=np.uint64))
                 print(compressed_data.get())
                 index += length
             else:
+                print("val at ", index, "false")
                 index += 1
-        print(compressed_data.get())
+        print("after compressing", compressed_data.get())
         return compressed_data.get()
             
     online_roi_data = dict()
     for roi_nr in range(num_rois):
         this_roi_array = roi_array[roi_nr]
+        
         online_roi_data[f'{roi_nr}'] = compress_roi_array(this_roi_array)
 
     # reshape this online_roi_data into a np array.
     online_roi_data_max_length = 0
-    for key, online_roi_data in online_roi_data.items():
-        this_size = online_roi_data.size
+    for key, this_online_roi_data in online_roi_data.items():
+        this_size = this_online_roi_data.size
         if this_size > online_roi_data_max_length:
             online_roi_data_max_length = this_size
     
     online_roi = np.zeros(shape=(num_rois, online_roi_data_max_length), dtype=np.uint64)
-    for key, online_roi_data in online_roi_data.items():
-        this_size = online_roi_data.size
-        online_roi[int(key),:this_size] = online_roi_data
+    for key, this_online_roi_data in online_roi_data.items():
+        this_size = this_online_roi_data.size
+        online_roi[int(key),:this_size] = this_online_roi_data
 
     return online_roi