[AGIPD][CORRECT][DARK] Extra-data with AGIPD
Reading fast and slow data from xfel h5 files using EXtra-data for AGIPD.
Description
Related to: and . AGIPD notebooks are updated with EXtra-data.
Using H5Files for Correction (Keeping the over sequences parallelization) and RunDirectory for Darks.
Updating agipdlib.py
1- A new class AGIPDConditions to read and validate similarity of all AGIPD conditions from a list of DataCollection of Fast and Slow data.
How Has This Been Tested?
Relevant Documents (optional)
DARK:
CORRECT:
OFFSET + COMMON-MODE:
AGIPD-COMMON_MODE_Master.pdf.pdf
Selecting pulses to correct [0, 50, 2]:
common-mode TRUE:
MASTER_CORR_PULSES_COMMON_MODE.pdf
EXT_CORR_PULSES_COMMON_MODE.pdf
Types of changes
- Bug fix (non-breaking change which fixes an issue)
- New feature (non-breaking change which adds functionality)
Checklist:
-
update calibration_configurations with the new configs names
Reviewers
Merge request reports
Activity
added In Progress label
assigned to @ahmedk
mentioned in merge request !518 (merged)
added 232 commits
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73b3e74b...fc5bb68e - 231 commits from branch
master - a0520ad4 - resolving conflicts and update pre-notebook
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73b3e74b...fc5bb68e - 231 commits from branch
added 1 commit
- 368a5744 - remove unneeded functions and remove rng_pulses
mentioned in merge request !596 (merged)
added 8 commits
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368a5744...3f9217d1 - 7 commits from branch
master - 54a691ae - merge master into branch
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368a5744...3f9217d1 - 7 commits from branch
added 1 commit
- 61c10714 - fix if not using dir creation data is selected
changed milestone to %3.5.0
added 1 commit
- 0b83fcf1 - fix if not using dir creation data is selected
added Waiting for review label and removed In Progress label
mentioned in merge request !601 (merged)
mentioned in merge request !616 (merged)
347 "instrument_src_mod = [\n", 348 " s for s in list(first_sequences_dc.all_sources) if \"0CH\" in s][0]\n", 349 "mod_channel = int(re.findall(r\".*0CH([0-9]+):.*\", instrument_src_mod)[0])\n", 378 350 "\n", 379 "# Evaluate aquisition rate\n", 380 "if acq_rate == 0:\n", 381 " acq_rate = get_acq_rate(fast_paths, slow_paths)\n", 351 "# Read module's image and cellId data.\n", 352 "image_dc = first_sequences_dc.select(\"*\", require_all=True)\n", 382 353 "\n", 383 "print(f\"Maximum memory cells to calibrate: {max_cells}\")" 354 "agipd_cond = AgipdCtrl(\n", 355 " run_dc=image_dc.union(H5File(control_fn)),\n", 356 " image_src=instrument_src_mod,\n", 357 " ctrl_src=ctrl_src,\n", 358 " raise_error=False, # to be able to process very old data without gain_setting value\n",
