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Danilo Ferreira de Lima
committed
#!/bin/bash
#SBATCH --partition=exfel
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=1
#SBATCH --time=8:00:00
#SBATCH --job-name=pes2spec
#SBATCH -o slurm.%x.err.txt
#SBATCH -e slurm.%x.err.txt
Danilo Ferreira de Lima
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optstring="d:"
DIR=results
while getopts ${optstring} arg; do
case ${arg} in
d)
DIR=${OPTARG}
S=$OPTIND
;;
*)
S=$((OPTIND))
break
;;
esac
done
OPTS="${@:$S}"
echo "Options: $OPTS"
source /usr/share/Modules/init/sh
module load exfel exfel_anaconda3
cd $HOME/scratch/karabo/devices/pes_to_spec
source env/bin/activate
pwd
export PYTHONPATH=$PYTHONPATH:$PWD
mkdir $DIR
do_it() {
p=$1
r=$2
rt=$3
output=$DIR/p${p}r${r}t${rt}
mkdir -p $output
echo "Proposal $p, run $r, test at run $rt"
CMD=(./pes_to_spec/test/offline_analysis.py -p $p -r $r -t $rt -d $output ${@:4})
echo "${CMD[*]}"
${CMD[*]} 2>&1 | tee $output/log.txt
}
do_it 900331 69 70 $OPTS
# train in run 2 and test in run 3
#do_it 3384 2 3 $OPTS
# new runs:
#for run in 2 4
#do
# do_it 3384 $run $run $OPTS
#done
# train in run 4 and test in run 3
#do_it 3384 4 3 $OPTS
# old run
#do_it 2828 206 206 $OPTS
#do_it 2828 206 207 $OPTS
#do_it 2828 207 207 $OPTS