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Commit 9eec4703 authored by Mikhail Karnevskiy's avatar Mikhail Karnevskiy
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Merge branch 'refactor/pep8_formatting' into 'master' 

Refactor: PEP8 refactor of the file

See merge request detectors/pycalibration!269
parents ca9636df 7a2424ac
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1 merge request!269Refactor: PEP8 refactor of the file
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xfel_calibrate/notebooks.py
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# paths are relative to the location of setup.py in the main package # paths are relative to the location of setup.py in the main package
notebooks = { notebooks = {
"AGIPD": { "AGIPD": {
"DARK": { "DARK": {
"notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb", "notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb",
"concurrency": {"parameter": "modules", "concurrency": {"parameter": "modules",
"default concurrency": list(range(16)), "default concurrency": list(range(16)),
"cluster cores": 8}, "cluster cores": 8},
}, },
"PC": { "PC": {
"notebook": "notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb", "notebook": "notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb",
"concurrency": {"parameter": "modules", "concurrency": {"parameter": "modules",
"default concurrency": 16, "default concurrency": 16,
"cluster cores": 32}, "cluster cores": 32},
}, },
"FF": { "FF": {
"notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb", "notebook": "notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb",
"concurrency": {"parameter": "modules", "concurrency": {"parameter": "modules",
"default concurrency": 16, "default concurrency": 16,
"cluster cores": 16}, "cluster cores": 16},
}, },
"CORRECT": { "CORRECT": {
"notebook": "notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb", "notebook": "notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb",
"dep_notebooks": ["notebooks/AGIPD/AGIPD_Correct_and_Verify_Summary_NBC.ipynb"], "dep_notebooks": [
"concurrency": {"parameter": "sequences", "notebooks/AGIPD/AGIPD_Correct_and_Verify_Summary_NBC.ipynb"],
"use function": "balance_sequences", "concurrency": {"parameter": "sequences",
"default concurrency": [-1], "use function": "balance_sequences",
"cluster cores": 16}, "default concurrency": [-1],
}, "cluster cores": 16},
"COMBINE": { },
"notebook": "notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb", "COMBINE": {
"concurrency": {"parameter": None, "notebook": "notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb",
"default concurrency": None, "concurrency": {"parameter": None,
"cluster cores": 8}, "default concurrency": None,
}, "cluster cores": 8},
}, },
},
"AGIPD64K": { "AGIPD64K": {
"DARK": { "DARK": {
"notebook": "notebooks/AGIPD/playground/AGIPD_SingleM_test_Dark.ipynb", "notebook": "notebooks/AGIPD/playground/AGIPD_SingleM_test_Dark.ipynb",
"concurrency": {"parameter": None, "concurrency": {"parameter": None,
"default concurrency": None, "default concurrency": None,
"cluster cores": 4}, "cluster cores": 4},
}, },
}, },
"LPD": { "LPD": {
"DARK": { "DARK": {
"notebook": "notebooks/LPD/LPDChar_Darks_NBC.ipynb", "notebook": "notebooks/LPD/LPDChar_Darks_NBC.ipynb",
"dep_notebooks": ["notebooks/LPD/LPDChar_Darks_Summary_NBC.ipynb"], "dep_notebooks": ["notebooks/LPD/LPDChar_Darks_Summary_NBC.ipynb"],
"concurrency": {"parameter": "modules", "concurrency": {"parameter": "modules",
"default concurrency": list(range(16)), "default concurrency": list(range(16)),
"cluster cores": 8}, "cluster cores": 8},
}, },
"PC": { "PC": {
"notebook": "notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb", "notebook": "notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb",
"concurrency": {"parameter": "modules", "concurrency": {"parameter": "modules",
"default concurrency": 16, "default concurrency": 16,
"cluster cores": 32}, "cluster cores": 32},
}, },
"FF": { "FF": {
"notebook": "notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb", "notebook": "notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb",
"concurrency": {"parameter": None, "concurrency": {"parameter": None,
"default concurrency": None, "default concurrency": None,
"cluster cores": 8}, "cluster cores": 8},
}, },
"CORRECT": { "CORRECT": {
"notebook": "notebooks/LPD/LPD_Correct_and_Verify.ipynb", "notebook": "notebooks/LPD/LPD_Correct_and_Verify.ipynb",
"concurrency": {"parameter": "sequences", "concurrency": {"parameter": "sequences",
"default concurrency": [-1], "default concurrency": [-1],
"use function": "balance_sequences", "use function": "balance_sequences",
"cluster cores": 32}, "cluster cores": 32},
}, },
"XGM_MINE": { "XGM_MINE": {
"notebook": "notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb", "notebook": "notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb",
"concurrency": {"parameter": "runs", "concurrency": {"parameter": "runs",
"use function": "create_run_list", "use function": "create_run_list",
"default concurrency": [-1], "default concurrency": [-1],
"cluster cores": 2}, "cluster cores": 2},
}, },
}, },
"PNCCD": { "PNCCD": {
"DARK": { "DARK": {
"notebook": "notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb", "notebook": "notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb",
"concurrency": {"parameter": None, "concurrency": {"parameter": None,
"default concurrency": None, "default concurrency": None,
"cluster cores": 32}, "cluster cores": 32},
}, },
"CORRECT": { "CORRECT": {
"notebook": "notebooks/pnCCD/Correct_pnCCD_NBC.ipynb", "notebook": "notebooks/pnCCD/Correct_pnCCD_NBC.ipynb",
"concurrency": {"parameter": "sequences", "concurrency": {"parameter": "sequences",
"default concurrency": [-1], "default concurrency": [-1],
"use function": "balance_sequences", "use function": "balance_sequences",
"cluster cores": 32}, "cluster cores": 32},
}, },
}, },
"GENERIC": { "GENERIC": {
"DB_TO_H5": { "DB_TO_H5": {
"notebook": "notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb", "notebook": "notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb",
"concurrency": {"parameter": None, "concurrency": {"parameter": None,
"default concurrency": None, "default concurrency": None,
"cluster cores": 32}, "cluster cores": 32},
"extend parms": "extend_parms", "extend parms": "extend_parms",
}, },
"STATS_FROM_DB": { "STATS_FROM_DB": {
"notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb", "notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb",
"concurrency": {"parameter": None, "concurrency": {"parameter": None,
"default concurrency": None, "default concurrency": None,
"cluster cores": 1}, "cluster cores": 1},
}, },
"STATS_FROM_DB2": { "STATS_FROM_DB2": {
"notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb", "notebook": "notebooks/generic/PlotFromCalDB_NBC.ipynb",
"dep_notebooks": ["notebooks/generic/PlotFromCalDB_Summary_NBC.ipynb"], "dep_notebooks": [
"concurrency": {"parameter": "submodules", "notebooks/generic/PlotFromCalDB_Summary_NBC.ipynb"],
"default concurrency": None, "concurrency": {"parameter": "submodules",
"cluster cores": 1}, "default concurrency": None,
}, "cluster cores": 1},
}, },
"TUTORIAL": { },
"TEST": { "TUTORIAL": {
"notebook": "notebooks/Tutorial/calversion.ipynb", "TEST": {
"concurrency": {"parameter": "random_seed", "notebook": "notebooks/Tutorial/calversion.ipynb",
"default concurrency": None, "concurrency": {"parameter": "random_seed",
"cluster cores": 4}, "default concurrency": None,
}, "cluster cores": 4},
}, },
"FASTCCD": { },
"DARK": { "FASTCCD": {
"notebook": "notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC_New_Common_Mode.ipynb", "DARK": {
"concurrency": {"parameter": None, "notebook": "notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC_New_Common_Mode.ipynb",
"default concurrency": None, "concurrency": {"parameter": None,
"cluster cores": 16}, "default concurrency": None,
}, "cluster cores": 16},
"CORRECT": { },
"notebook": "notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb", "CORRECT": {
"concurrency": {"parameter": "sequences", "notebook": "notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb",
"default concurrency": [-1], "concurrency": {"parameter": "sequences",
"use function": "balance_sequences", "default concurrency": [-1],
"cluster cores": 4}, "use function": "balance_sequences",
}, "cluster cores": 4},
}, },
"JUNGFRAU": { },
"DARK": { "JUNGFRAU": {
"notebook": "notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb", "DARK": {
"concurrency": {"parameter": None, "notebook": "notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb",
"default concurrency": None, "concurrency": {"parameter": None,
"cluster cores": 4}, "default concurrency": None,
}, "cluster cores": 4},
"CORRECT": { },
"notebook": "notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb", "CORRECT": {
"concurrency": {"parameter": "sequences", "notebook": "notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb",
"default concurrency": [-1], "concurrency": {"parameter": "sequences",
"use function": "balance_sequences", "default concurrency": [-1],
"cluster cores": 14}, "use function": "balance_sequences",
}, "cluster cores": 14},
}, },
"EPIX": { },
"DARK": { "EPIX": {
"notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb", "DARK": {
"concurrency": {"parameter": None, "notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb",
"default concurrency": None, "concurrency": {"parameter": None,
"cluster cores": 4}, "default concurrency": None,
}, "cluster cores": 4},
},
"CORRECT": {
"notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb",
"concurrency": {"parameter": "sequences",
"default concurrency": [-1],
"use function": "balance_sequences",
"cluster cores": 4},
},
},
"EPIX100": {
"DARK": {
"notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb",
"concurrency": {"parameter": None,
"default concurrency": None,
"cluster cores": 4},
},
"CORRECT": { "CORRECT": {
"notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb", "notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb",
"concurrency": {"parameter": "sequences", "concurrency": {"parameter": "sequences",
"default concurrency": [-1], "default concurrency": [-1],
"use function": "balance_sequences", "use function": "balance_sequences",
"cluster cores": 4}, "cluster cores": 4},
}, },
}, },
"EPIX10K": { "EPIX100": {
"DARK": { "DARK": {
"notebook": "notebooks/ePix/Characterize_Darks_ePix10K_NBC.ipynb", "notebook": "notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb",
"concurrency": {"parameter": None, "concurrency": {"parameter": None,
"default concurrency": None, "default concurrency": None,
"cluster cores": 4}, "cluster cores": 4},
}, },
"CORRECT": {
"CORRECT": { "notebook": "notebooks/ePix/Correction_ePix_NBC.ipynb",
"notebook": "notebooks/ePix/Correction_ePix10K_NBC.ipynb", "concurrency": {"parameter": "sequences",
"concurrency": {"parameter": "sequences", "default concurrency": [-1],
"default concurrency": [-1], "use function": "balance_sequences",
"use function": "balance_sequences", "cluster cores": 4},
"cluster cores": 4}, },
} },
}, "EPIX10K": {
"DSSC": { "DARK": {
"DARK": { "notebook": "notebooks/ePix/Characterize_Darks_ePix10K_NBC.ipynb",
"notebook": "notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb", "concurrency": {"parameter": None,
"concurrency": {"parameter": "modules", "default concurrency": None,
"default concurrency": list(range(16)), "cluster cores": 4},
"cluster cores": 8}, },
},
"CORRECT": { "CORRECT": {
"notebook": "notebooks/DSSC/DSSC_Correct_and_Verify.ipynb", "notebook": "notebooks/ePix/Correction_ePix10K_NBC.ipynb",
"concurrency": {"parameter": "sequences", "concurrency": {"parameter": "sequences",
"use function": "balance_sequences", "default concurrency": [-1],
"default concurrency": [-1], "use function": "balance_sequences",
"cluster cores": 16}, "cluster cores": 4},
}, }
}, },
} "DSSC": {
"DARK": {
"notebook": "notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb",
"concurrency": {"parameter": "modules",
"default concurrency": list(range(16)),
"cluster cores": 8},
},
"CORRECT": {
"notebook": "notebooks/DSSC/DSSC_Correct_and_Verify.ipynb",
"concurrency": {"parameter": "sequences",
"use function": "balance_sequences",
"default concurrency": [-1],
"cluster cores": 16},
},
},
}
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