Add input parameters as a chapter to report

xfel_calibrate/calibrate.py

@@ -467,7 +467,20 @@ def run():
         # create a temporary output directory to work in        
         run_tmp_path = "{}/slurm_tmp_{}".format(temp_path, run_uuid)
         os.makedirs(run_tmp_path)
-        
+
+        # Write all input parameters to rst file to be included to final report
+        parms = parameter_values(parms, **args)
+        with open("{}/slurm_tmp_{}/InputParameters.rst".format(temp_path, run_uuid), "w") as finfile:
+            finfile.write("Input Parameters \n")
+            finfile.write("================ \n")
+            for p in parms:
+                finfile.write("{} \n\n".format(p.comment))
+                finfile.write(".. parsed-literal::\n")                           
+                if p.type is str:
+                    finfile.write("    {} = '{}' \n\n".format(p.name, p.value))
+                else:
+                    finfile.write("    {} = {} \n\n".format(p.name, p.value))
+
         # wait on all jobs to run and then finalize the run by creating a report from the notebooks
         out_path = "{}/{}/{}/{}".format(report_path, detector.upper(), caltype.upper(), datetime.now().isoformat())
         if try_report_to_output: