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Refactor: Move report related part to xfel_calibrate

Mikhail Karnevskiy requested to merge refactor/localize_report into master

@ahmedk

Now all report related code is located at xfel_calibrate. Therefore this package stays for submitting notebooks to slurm and report generation. Moved from tools.py to finalize.py functions are untouched.

Edited by Mikhail Karnevskiy

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