[Timepix] Throw pasha at it

See merge request !979

[AGIPD][CORRECT][DARK] Run calibration for AGIPD SM

See merge request !977

Updating Timepix3 Calibration Pipeline for compatibility with new Karabo Implementation + some general improvements

See merge request !974

Updating Timepix3 Calibration Pipeline for compatibility with new Karabo Implementation + some general improvements

[AGIPD][DARK] Avoid failed jobs for creating constants and injecting them

See merge request !975

Allow pipelines to be part of nodes in DataFile API

See merge request !976

final changes related by differentiating between module index and module numbers. This should all be replaced with CALCAT metadata

1.Plot agipd single module geometry for correct and darks
2.Fix sorting dark runs
3.Fix reading a single module which doesnt start at 0

- With this commit dark processing should work with no summary chapters
- Remove RedBu cmap as a bonus change

[AGIPD][Correct] Some plots improvements for AGIPD offline correction

See merge request !965

[Jungfrau][Correct] Avoid `NAN` disturbance for correction plots scale

See merge request !973

Make the run type regex for skipping JF darks less aggressive

See merge request !971

[Gotthard2][Correct] Store mask data properly for gotthard2 25um

See merge request !970

- replace np.percentile(, [0,100]) with min(), max()
- put back histogram plots with get_range for no need of change.
- improve gain plot and add clamp function

Convert request time to local timezone in report

See merge request !972